GBrowse Details

Vigan.06G137600.01

Basic Information:
Name: Vigan.06G137600.01
Multiple alignment
Variant Information
Position: Chr06:26387560..26395383 (+ strand)
Length: 7824
Functional Information:
Description: Similar to uncharacterized protein. [C6TF49, Glycine max]
GO: Biological Process: protein transport (GO:0015031)
Cellular Component: integral to membrane (GO:0016021)
InterPro: SCAMP (IPR007273)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:34.59,43.91,41.66,47.23,87.96,70.72,36.65,45.23
Automatic updates:
Name: NM_001255167 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max secretory carrier-associated membrane protein (LOC100796729), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:26387560..26387793 (+ strand)
Length: 234
Type: five_prime_UTR
Position: Chr06:26387794..26387853 (+ strand)
Length: 60
Type: CDS
Position: Chr06:26389244..26389300 (+ strand)
Length: 57
Type: CDS
Position: Chr06:26391203..26391304 (+ strand)
Length: 102
Type: CDS
Position: Chr06:26391400..26391462 (+ strand)
Length: 63
Type: CDS
Position: Chr06:26391814..26391847 (+ strand)
Length: 34
Type: CDS
Position: Chr06:26391931..26392053 (+ strand)
Length: 123
Type: CDS
Position: Chr06:26393341..26393403 (+ strand)
Length: 63
Type: CDS
Position: Chr06:26393480..26393573 (+ strand)
Length: 94
Type: CDS
Position: Chr06:26394031..26394076 (+ strand)
Length: 46
Type: CDS
Position: Chr06:26394166..26394233 (+ strand)
Length: 68
Type: CDS
Position: Chr06:26394509..26394557 (+ strand)
Length: 49
Type: CDS
Position: Chr06:26394858..26394923 (+ strand)
Length: 66
Type: CDS
Position: Chr06:26395019..26395105 (+ strand)
Length: 87
Type: CDS
Position: Chr06:26395106..26395383 (+ strand)
Length: 278
Type: three_prime_UTR


>Vigan.06G137600.01
AAAGAATATT AAAGTAAAGT TTTGTACAAA AAAAAATAAA AAGGTATTAA AGAAGAAGAT GGTTATATAA GAACGCATGC
AGATTTTTCG TTTGTGGAGT TTGTCAGAAA CAAACAGAAC CGGAAAGAGA GGAAGCCGTA GATTACAAGG CTTTCTTCTC
TGTCTGTCAC TCTCTTACTC TGTCACGCAC ATTGCACCAA CAATCGCATC CATTTCTCTC TTTCACTCCG ATTCATGAGT
CGCTACGATC CCAATCCCTT CGACCAAGAA GAGGTCGAGG TTAATCCCTT CGCGGATGGA CAGGCTAAAG GAAAAGGGTC
AAGTTATGGT GGAGGTGCAT TTTATACCAC TAATTCTGGA AGTGTTCCCC CTGCAAACTC AAAGCTCTCA CCCCTTCCTC
CAGAGCGTTA TGATCGTGGG GCAAATATTG ACATCCCCCT TGATAACTCC AAGGACACCA AAGCAAAGGA GAAGGAACTT
CAAGCTAGAG AAGCTGACTT AAAAAGAAGG GAACAGGAAC TAAAACGAAG GGAAGATGCC ATAGCACGAG CTGGAATAGT
TATAGAGGAG AAAAATTGGC CACCTTTTTT CCCCATCATT CATCATGACA TTGGAAACGA AATACCAATA CATCTTCAAA
GGACCCAATA CATTGCATTT TCGACATGGT TGGGTTTGGT TCTGTGTCTT GTATGGAATA TTGTGGCAGT TACTACTGCT
TGGATCAAAG GAGAAGGTCC AACCATCTGG TTTCTTGCGA TTATATATTG TATTTCGGGT GTTCCAGGAT CCTATGTGTT
GTGGTATCGC CCTCTTTATC GTGCTATGAG GACCGACAGT GCTCTGAAAT TTGGCTGGTT TTTCTTACTT TACATGATTC
ACATTGCCTT CTGCATTCTC GCTGCAGTTG CTCCACCAAT TATCTTCAAA GGAAAATCTC TGACGGGTAT TTTGGCTGCG
ATTGACGTGT TGGGCGATAA TGCATTGGTT GGGATATTCT ACTTTATTGG GTTTGGATTT TTCTGTCTTG AGTCAGTGCT
GAGCATCTGG GTTATACAGC AAGTATACAT GTACTTCCGC GGCAGTGGCA AGACTGAAGT TTTGAAGCGT GATGCTGCGA
GAGGGACAAT GATGGCAGCT CTATAACATG TCACTTGCAA ATGTTTTTCC CATGCTTGCC AGAAAGATTA TTTCATAAGT
TACCAAATCC TTACACACTT TTTGCGCTTT GTTTGATACT GGACTTGTTT TTCTAGGCTT TTGGCTAGGT TTCAGTCAAA
CCAGATCATT AAGATAGAAG AAGCTTAGTT GTGCATATAT AGAAAAACAT TGTTTGAGAT AAGCACCTTT ACATTTTTTT
ATGTCAGCAT TGCTTATATT TTTATTAACA AAATACTCAA TCTATTCCTC CCTCTTTCTT CTTT

>Vigan.06G137600.01
ATGAGTCGCT ACGATCCCAA TCCCTTCGAC CAAGAAGAGG TCGAGGTTAA TCCCTTCGCG GATGGACAGG CTAAAGGAAA
AGGGTCAAGT TATGGTGGAG GTGCATTTTA TACCACTAAT TCTGGAAGTG TTCCCCCTGC AAACTCAAAG CTCTCACCCC
TTCCTCCAGA GCGTTATGAT CGTGGGGCAA ATATTGACAT CCCCCTTGAT AACTCCAAGG ACACCAAAGC AAAGGAGAAG
GAACTTCAAG CTAGAGAAGC TGACTTAAAA AGAAGGGAAC AGGAACTAAA ACGAAGGGAA GATGCCATAG CACGAGCTGG
AATAGTTATA GAGGAGAAAA ATTGGCCACC TTTTTTCCCC ATCATTCATC ATGACATTGG AAACGAAATA CCAATACATC
TTCAAAGGAC CCAATACATT GCATTTTCGA CATGGTTGGG TTTGGTTCTG TGTCTTGTAT GGAATATTGT GGCAGTTACT
ACTGCTTGGA TCAAAGGAGA AGGTCCAACC ATCTGGTTTC TTGCGATTAT ATATTGTATT TCGGGTGTTC CAGGATCCTA
TGTGTTGTGG TATCGCCCTC TTTATCGTGC TATGAGGACC GACAGTGCTC TGAAATTTGG CTGGTTTTTC TTACTTTACA
TGATTCACAT TGCCTTCTGC ATTCTCGCTG CAGTTGCTCC ACCAATTATC TTCAAAGGAA AATCTCTGAC GGGTATTTTG
GCTGCGATTG ACGTGTTGGG CGATAATGCA TTGGTTGGGA TATTCTACTT TATTGGGTTT GGATTTTTCT GTCTTGAGTC
AGTGCTGAGC ATCTGGGTTA TACAGCAAGT ATACATGTAC TTCCGCGGCA GTGGCAAGAC TGAAGTTTTG AAGCGTGATG
CTGCGAGAGG GACAATGATG GCAGCTCTAT AA

>Vigan.06G137600.01
MSRYDPNPFD QEEVEVNPFA DGQAKGKGSS YGGGAFYTTN SGSVPPANSK LSPLPPERYD RGANIDIPLD NSKDTKAKEK
ELQAREADLK RREQELKRRE DAIARAGIVI EEKNWPPFFP IIHHDIGNEI PIHLQRTQYI AFSTWLGLVL CLVWNIVAVT
TAWIKGEGPT IWFLAIIYCI SGVPGSYVLW YRPLYRAMRT DSALKFGWFF LLYMIHIAFC ILAAVAPPII FKGKSLTGIL
AAIDVLGDNA LVGIFYFIGF GFFCLESVLS IWVIQQVYMY FRGSGKTEVL KRDAARGTMM AAL*