VIGGS:GBrowse

Vigan.06G137900.01

Basic Information:

Name:	Vigan.06G137900.01 Multiple alignment Variant Information
Position:	Chr06:26406212..26410384 (- strand)
Length:	4173

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LRY1, Glycine max]
GO:	Molecular Function: DNA binding (GO:0003677)
InterPro:	SAND domain (IPR000770)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:74.90,51.72,14.75,14.61,16.88,19.87,20.84,11.48
Arabidopsis thaliana homolog:	AT4G28190.2

Automatic updates:

Name:	NM_001254214 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein ULTRAPETALA 1-like (LOC100815782), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:26406212..26406470 (- strand)
Length:	259
Type:	three_prime_UTR

Position:	Chr06:26406471..26406645 (- strand)
Length:	175
Type:	CDS

Position:	Chr06:26408205..26408529 (- strand)
Length:	325
Type:	CDS

Position:	Chr06:26409780..26409990 (- strand)
Length:	211
Type:	CDS

Position:	Chr06:26409991..26410384 (- strand)
Length:	394
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G137900.01
CAAAAACCTA GTCTGGTTTC ATGAGAGGAT TTCCTATAAA CTTTTGTTTT CTCTCTCTCT ATCTCTCTTT ATATATCAAT
ATCCTCCCTC ATCTCATGAC ATATCATATC ATGCATAGCA AGTAGCACCC TAAGCCTTTT AACCCCTTCA CCTCACTCAA
CATTTGTTTG GCTACGCCAG CTCATTCATT TATTCATTCA ACCCCATCAC CAACCCCTCA CTATCTCTCT CTATTCCTCT
CTTTCTCTCT CTCTTCTCAA ACGTTTCAAC GTTTCAGTGT CAGATCTCAA GGCTTAACGT GGTGTTGGGT CGTCTTCAGC
TTTGCGTTGC CCTTGGTATT CGATTCTACA CCCACATCGT TTTCTGGTAA AAAACAGAGT CTTTTGAGGG GAAAATGGCT
AACGGGTTAG AGAGAGAAAG TGGGTCGACG ATATTCAGCG AGGAGGAGCT GAGAGAGGTG AGTGGGGTGA AGCGTGTTGG
GGACTATGTC GAAGTCACGT GTGGGTGCAC GAGCCATAGA TATGGTGACG CTGTTGGAAG ACTTAGGGTT TTCGTTAATG
GGTACCTTGA AATCACTTGT GAATGCACCC CTGGTTGTCA AGAAGCCAAG TTGACTCCTT CTGCATTTGA GAAACACTCT
GGAAGAGAGA CTGCCAGGAA ATGGAAGAAT AATGTCTGGG TGATTGTTAA TGGTGAGAAG GTTCCACTGT GTAAAACAGT
ACTGCTCAAA TACTACAATC AGGTGTCAAA AGCAGCAAAT GGATCCCATA GATCCCAAAA TGGCCGTGCT TGTCACCGTG
ATGAGTTTGT TCGCTGCTCT AGGTGCAACA AAGAGCGTAG GTTTCGTCTG AGAACAAAAG AGGAATGCCG CATTCACCAT
GATGCTTTGG CAGATGCAAA TTGGAAATGT TCTGATCTTC CATATGACAA AATTACATGT GATGATGAAG AGGAAAGAGC
AAGTCGTAGA GTTTACAGGG GATGCACTCG TTCTCCAACA TGCAAAGGTT GCACTTCTTG TGTCTGTTTT GGCTGTGATA
TCTGCCGCTT TTCAGAGTGC AGTTGCCAGA CTTGTGCTGA CTTTACAAAC AATGCCAAAG CTTGACTCCT TCATATTATA
TGCTATTTTC TATTTTCTCA CTTGTTAATG TGACCTATTT ATGCCTCCCT ATAAGAACAA TACGTTTAAT TTAATTTCCT
AATTGCTCAT TACCAGTCTG ACTGAGTTCA CCATTCCTTG TTCTCACTGT GACTGGATCA TAAATTTCAA TCTCAGCAAT
TTATTTTCAC TCTCTCTTTC TCCTTATGTT TGTTTATATA TATTATCATG AAGGAAAAAA GATGTTAATA AAAGAGGTGG
CAGG

[show][hide][copy]CDS

>Vigan.06G137900.01
ATGGCTAACG GGTTAGAGAG AGAAAGTGGG TCGACGATAT TCAGCGAGGA GGAGCTGAGA GAGGTGAGTG GGGTGAAGCG
TGTTGGGGAC TATGTCGAAG TCACGTGTGG GTGCACGAGC CATAGATATG GTGACGCTGT TGGAAGACTT AGGGTTTTCG
TTAATGGGTA CCTTGAAATC ACTTGTGAAT GCACCCCTGG TTGTCAAGAA GCCAAGTTGA CTCCTTCTGC ATTTGAGAAA
CACTCTGGAA GAGAGACTGC CAGGAAATGG AAGAATAATG TCTGGGTGAT TGTTAATGGT GAGAAGGTTC CACTGTGTAA
AACAGTACTG CTCAAATACT ACAATCAGGT GTCAAAAGCA GCAAATGGAT CCCATAGATC CCAAAATGGC CGTGCTTGTC
ACCGTGATGA GTTTGTTCGC TGCTCTAGGT GCAACAAAGA GCGTAGGTTT CGTCTGAGAA CAAAAGAGGA ATGCCGCATT
CACCATGATG CTTTGGCAGA TGCAAATTGG AAATGTTCTG ATCTTCCATA TGACAAAATT ACATGTGATG ATGAAGAGGA
AAGAGCAAGT CGTAGAGTTT ACAGGGGATG CACTCGTTCT CCAACATGCA AAGGTTGCAC TTCTTGTGTC TGTTTTGGCT
GTGATATCTG CCGCTTTTCA GAGTGCAGTT GCCAGACTTG TGCTGACTTT ACAAACAATG CCAAAGCTTG A

[show][hide][copy]PROTEIN

>Vigan.06G137900.01
MANGLERESG STIFSEEELR EVSGVKRVGD YVEVTCGCTS HRYGDAVGRL RVFVNGYLEI TCECTPGCQE AKLTPSAFEK
HSGRETARKW KNNVWVIVNG EKVPLCKTVL LKYYNQVSKA ANGSHRSQNG RACHRDEFVR CSRCNKERRF RLRTKEECRI
HHDALADANW KCSDLPYDKI TCDDEEERAS RRVYRGCTRS PTCKGCTSCV CFGCDICRFS ECSCQTCADF TNNAKA*