GBrowse Details

Vigan.06G148900.01

Basic Information:
Name: Vigan.06G148900.01
Multiple alignment
Variant Information
Position: Chr06:27787881..27789789 (+ strand)
Length: 1909
Functional Information:
Description: Similar to protein translation factor SUI1 homolog isoform X2. [XP_004515084.1, Cicer arietinum]
GO: Biological Process: translational initiation (GO:0006413)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation initiation factor SUI1 (IPR001950)
Eukaryotic translation initiation factor SUI1 (IPR005874)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.24,0.00,1.48,1.08,0.42,0.56,0.80,0.79
Arabidopsis thaliana homolog: AT1G54290.1
Automatic updates:
Name: NM_001252722 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein translation factor SUI1 homolog (LOC100784390), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:27787881..27788266 (+ strand)
Length: 386
Type: five_prime_UTR
Position: Chr06:27788267..27788303 (+ strand)
Length: 37
Type: CDS
Position: Chr06:27788768..27788973 (+ strand)
Length: 206
Type: CDS
Position: Chr06:27789083..27789136 (+ strand)
Length: 54
Type: CDS
Position: Chr06:27789315..27789359 (+ strand)
Length: 45
Type: CDS
Position: Chr06:27789360..27789789 (+ strand)
Length: 430
Type: three_prime_UTR


>Vigan.06G148900.01
TGTTTTTATT GATGATTATG TGCACAGAAT TATGCAGATC TCATAACTTC CCTCCCTTTC TGGCCTATTT TATATTGGCC
TTTTTACTAT TGATGATGGT GAAATAAACA AATTTGTGTT TTCGGATGCA AATGTCGTAC TCATGAGACC ATAATTTGAG
AATTCTAAGG TGCGGTGGTA AGGTGATAAA AGTTGCTGTC TTTCTTGTTC ATATTTTGTC GGATGAGAAT TAGCAGTGAG
CATAAACACA AGAGTAGCAT CATCGAAAAT GTCAAACATC AAATCTCATA TCTGACTTGT AGTATATCTA ATTTCTGTTT
CCAGTGCTTG TTGATTAATT ACATCAGAAG GACTTTGCTT GTTACAAGTA ACCAAGGGCA ACTTTCATGT CTGAATTCGA
AACAAACATC CCAAGTGCTT TTGATCCCTT TGCTGAGGCA AATGCTGAGG ACTCAGGTGC TGGGACGAAA GAGTATGTTC
ATGTTCGTGT ACAACAACGT AACGGAAGGA AAAGCCTAAC AACTGTTCAA GGATTAAAGA AAGAGTATAG CTACAGCAAA
ATACTCAAAG ACCTGAAGAA AGAATTCTGC TGCAATGGTA CTGTTGTTCA AGACCCTGAG TTGGGCCAGG TTATACAACT
TCAGGGAGAT CAAAGAAAGA ATGTTTCTAC TTTCCTTGTG CAGGCTGGCA TAGTGAAGAA AGAACATATC AAGCTTCATG
GTTTCTAAGA TCCAAGAACA GTGGCATCAA GATTGAATAT GAGCATCAGC TTCTTATAAA TCTGAATTCA AGCAATTTTT
AGTGACATCA AGATTCTGTT ATATCGTAGC TAGAGTCATA TGTAATCTTC TGTGGTATTG TTTACCTGTG TTCTGGAAAG
TTACTGCTGA GGGATAAATG GTAAGGATAA TGTCTATATC TAAGACAATT GTCCTGAATA AATTTGTGAT TATTCTTCCC
TCTGCAAGTG ACTCGGCCTT TTTGGTTGCA TTTTGTTTTT GGTCATTGAC CTGCCAAATT TTGTTAACTG ATTGGGTTAA
CTTGATAGAA ACTGAGATAC ACACCAACCT TAACCCTGCC TGCTACTGTA AGAAACTGAG GGCAGAGTGA AAAGTCGGTA
GAAGGTAATT ATAAAAATTG AATTTTTATC TTTAGAAA

>Vigan.06G148900.01
ATGTCTGAAT TCGAAACAAA CATCCCAAGT GCTTTTGATC CCTTTGCTGA GGCAAATGCT GAGGACTCAG GTGCTGGGAC
GAAAGAGTAT GTTCATGTTC GTGTACAACA ACGTAACGGA AGGAAAAGCC TAACAACTGT TCAAGGATTA AAGAAAGAGT
ATAGCTACAG CAAAATACTC AAAGACCTGA AGAAAGAATT CTGCTGCAAT GGTACTGTTG TTCAAGACCC TGAGTTGGGC
CAGGTTATAC AACTTCAGGG AGATCAAAGA AAGAATGTTT CTACTTTCCT TGTGCAGGCT GGCATAGTGA AGAAAGAACA
TATCAAGCTT CATGGTTTCT AA

>Vigan.06G148900.01
MSEFETNIPS AFDPFAEANA EDSGAGTKEY VHVRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDPELG
QVIQLQGDQR KNVSTFLVQA GIVKKEHIKL HGF*