GBrowse Details

Vigan.06G155400.01

Basic Information:
Name: Vigan.06G155400.01
Multiple alignment
Variant Information
Position: Chr06:28753020..28759299 (+ strand)
Length: 6280
Functional Information:
Description: Similar to axial regulator YABBY 2-like isoform X2. [XP_004487439.1, Cicer arietinum]
InterPro: YABBY protein (IPR006780)
High mobility group box domain (IPR009071)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.60,1.16,31.31,29.80,0.00,44.85,0.00,8.47
Arabidopsis thaliana homolog: AT1G08465.1
Automatic updates:
Name: NM_001357806 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein YABBY 9 (LOC100500026), transcript variant 2, mRNA.
PubMed ID: 28866235 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001357823 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein YABBY 11 (LOC100500091), transcript variant 1, mRNA.
PubMed ID: 28866235 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:28753020..28753158 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr06:28753159..28753230 (+ strand)
Length: 72
Type: CDS
Position: Chr06:28755465..28755584 (+ strand)
Length: 120
Type: CDS
Position: Chr06:28755789..28755918 (+ strand)
Length: 130
Type: CDS
Position: Chr06:28756904..28756952 (+ strand)
Length: 49
Type: CDS
Position: Chr06:28757491..28757566 (+ strand)
Length: 76
Type: CDS
Position: Chr06:28758861..28758965 (+ strand)
Length: 105
Type: CDS
Position: Chr06:28758966..28759299 (+ strand)
Length: 334
Type: three_prime_UTR


>Vigan.06G155400.01
TTCTCTTCCT TCCGCGTCTT CTGTAAATCG TTGATGATCA TGTTCACTTT TCTTTCAGCC AAGTGATTCT CTCCCCCGTG
ATCTGCCTAT AAATCCACCA AGCACACACT CAAAGGACAC AGTCACATAT AGATTAAAAA TGTCAATGGA AATGATGGCA
ACGGAACGTG TTTGTTATGT TCACTGCAAC TTCTGCAACA CCATTCTAGC GGTTAGTGTT CCATACAACA GTTTGCTAAC
CATAGTGACG GTTAGATGTG GACATTGCGC TAATTTGCTA TCAGTTAACA TGGGAGCATC CCTTCAACCA TTTCCTCCTC
AAGACCCTCA GTCACAGAAA CAGCACCTAA GCTTTGAAGA ACCCAGCAGC AAGGAACTGG GATCCTCATC TTCAAAATGT
AACAAAATAG CGCCATTTGA GGCAGTAGAG CATGAACAAC CAAGGATTCC TCCCATTCGT CCTACAGAGA AGAGACATCG
TGTGCCTTCT GCTTATAATC GATTCATTAA GGAGGAAATC CAAAGGATTA AGGCTAGTAA TCCAGATATC AGCCACAGGG
AGGCTTTCAG CTCCGCAGCC AAAAACTGGG CACATTTCCC TCACATTCAC TTTGGGTTAA AGCTGGATGG TAACAGTCAA
GGAAAGTTGG AGCAGGGAGA AGGAGGTGAA AAGACCAATG GATTCTACTG ATATAAATGG AAGCCTGTGA GTATGAGCTT
GTTTTTTTCA TGCTTGACCT AAATCAGTGA AAATGAGGTT GATCAAATTT CCCAATCGTA CAACTGGATG GGAGACTCCT
GCAAATTAAC CTCACCCTCT CTCACCAATG TTTAATAGTA CATGTATTGC CCTTTTCTAT ATATATAGAT ATATCGTTGT
TATGAAATGA TTGCCATTCT TGTGATTGCA TTTATTGTGT TGAATTTGAG CCCTTAAGTA AACAACACGT TCCTCTATAT
ATCATAATGA TGATGATGCT TCTTCAATCA TCATAATCTA AAGTGTTTGA GTGTGTTTAA ATCTC

>Vigan.06G155400.01
ATGTCAATGG AAATGATGGC AACGGAACGT GTTTGTTATG TTCACTGCAA CTTCTGCAAC ACCATTCTAG CGGTTAGTGT
TCCATACAAC AGTTTGCTAA CCATAGTGAC GGTTAGATGT GGACATTGCG CTAATTTGCT ATCAGTTAAC ATGGGAGCAT
CCCTTCAACC ATTTCCTCCT CAAGACCCTC AGTCACAGAA ACAGCACCTA AGCTTTGAAG AACCCAGCAG CAAGGAACTG
GGATCCTCAT CTTCAAAATG TAACAAAATA GCGCCATTTG AGGCAGTAGA GCATGAACAA CCAAGGATTC CTCCCATTCG
TCCTACAGAG AAGAGACATC GTGTGCCTTC TGCTTATAAT CGATTCATTA AGGAGGAAAT CCAAAGGATT AAGGCTAGTA
ATCCAGATAT CAGCCACAGG GAGGCTTTCA GCTCCGCAGC CAAAAACTGG GCACATTTCC CTCACATTCA CTTTGGGTTA
AAGCTGGATG GTAACAGTCA AGGAAAGTTG GAGCAGGGAG AAGGAGGTGA AAAGACCAAT GGATTCTACT GA

>Vigan.06G155400.01
MSMEMMATER VCYVHCNFCN TILAVSVPYN SLLTIVTVRC GHCANLLSVN MGASLQPFPP QDPQSQKQHL SFEEPSSKEL
GSSSSKCNKI APFEAVEHEQ PRIPPIRPTE KRHRVPSAYN RFIKEEIQRI KASNPDISHR EAFSSAAKNW AHFPHIHFGL
KLDGNSQGKL EQGEGGEKTN GFY*