GBrowse Details

Vigan.06G156100.01

Basic Information:
Name: Vigan.06G156100.01
Multiple alignment
Variant Information
Position: Chr06:28811708..28815427 (+ strand)
Length: 3720
Functional Information:
Description: Similar to Expp1 protein. [Q2HPL4, Solanum tuberosum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.88,7.39,6.45,3.37,17.61,7.45,6.75
Arabidopsis thaliana homolog: AT3G44150.1
Automatic updates:
Name: NM_001253998 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100818051 (LOC100818051), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:28811708..28811904 (+ strand)
Length: 197
Type: five_prime_UTR
Position: Chr06:28811905..28812204 (+ strand)
Length: 300
Type: CDS
Position: Chr06:28814750..28814857 (+ strand)
Length: 108
Type: CDS
Position: Chr06:28814947..28815258 (+ strand)
Length: 312
Type: CDS
Position: Chr06:28815259..28815427 (+ strand)
Length: 169
Type: three_prime_UTR


>Vigan.06G156100.01
ACCAAATTTG CCACCATCCC AGAACTCTAA TCACCTTTTT CTTCTTATAG CTCTCCAAAG TTTGTAACTT TACATGGTAG
GATAAAAATC AGTTACACCC CGTTAGTAGC CAGTAGATTC AAAGTTGAGG GGAAAGAAGA AAACAAAAGC TTGGAACTCC
TACCACACTA TCATCATCAT CAAATCCAAA CACAACAATG GCAGCGAAAG GGGCATTGTG GTTGATGATG CTGCCACTGG
TAGTACCTGT TGTTATTGCC ACTAACACCA ACAACGTGTA CCAGCCTTGT GCTGATGCCA AGATTCAGAG ATCTGATGGC
TTCACTTTTG GCATTGCCTT CAGTTCCAGG GAGTCTTTCT TCTTCAATCA GTCCCTTCAG CTCTCTCCCT GTGACCATCG
TCTTTCTCTC TCGTCCTCCA ACTCACAGCT TGCTCTCTTT CGTCCCAAGG TTGATGAGAT CTCTCTCCTC ACCATCAACA
CCTCTAGTTT TTTCCCTGAT AGTTATGGTG GATATATGGT GGCATTTGCT GGGAGAAAGT ATGCTGCACG GTCTCCACTT
GCATTTGTTG CAAACAGCAC ATATACAGTG ACAAGTTTCA CACTGGTGCT GGAGTTTCAG AAGGGTAGGC TGCAGAACTT
GTACTGGAAG AGAGATGGTT GCTCTTCATG CAAGGGAAAA TCCAACTTTG TTTGCCTCAA CAAACAAGAT TGTGCTATCA
GAACATCATC TTGTAAAGGC AGAGGAGGGG CAGTAGATTG CAGTCTAGGA ATTCAGCTAG CATTTTCTGG TACAGACAAG
CATCTATCAG TGCTTAATTC ATGGTATGAA GTGGAAAATC TGCGGCAGTA CTCTCTCTAC GGCTTGTACT CAAATCTGAG
GGACTCTCTC ACCAGCCAGT ATAACAAATT CTTTTAACAA CATAAAGAAA ATTTCTTCCC ATGGATTGTT TTAATGGTTT
GGGGATGGTA TTGTAACTTC TGTGACTATA TTGTTCTTTG CCTTCTTATT TGTTACTTCA TATTTATTGC ATACCAGTTT
TTGGTTTATG TCAGCATTAC ATGAAGAGAA TTTGTACATT CTTGCA

>Vigan.06G156100.01
ATGGCAGCGA AAGGGGCATT GTGGTTGATG ATGCTGCCAC TGGTAGTACC TGTTGTTATT GCCACTAACA CCAACAACGT
GTACCAGCCT TGTGCTGATG CCAAGATTCA GAGATCTGAT GGCTTCACTT TTGGCATTGC CTTCAGTTCC AGGGAGTCTT
TCTTCTTCAA TCAGTCCCTT CAGCTCTCTC CCTGTGACCA TCGTCTTTCT CTCTCGTCCT CCAACTCACA GCTTGCTCTC
TTTCGTCCCA AGGTTGATGA GATCTCTCTC CTCACCATCA ACACCTCTAG TTTTTTCCCT GATAGTTATG GTGGATATAT
GGTGGCATTT GCTGGGAGAA AGTATGCTGC ACGGTCTCCA CTTGCATTTG TTGCAAACAG CACATATACA GTGACAAGTT
TCACACTGGT GCTGGAGTTT CAGAAGGGTA GGCTGCAGAA CTTGTACTGG AAGAGAGATG GTTGCTCTTC ATGCAAGGGA
AAATCCAACT TTGTTTGCCT CAACAAACAA GATTGTGCTA TCAGAACATC ATCTTGTAAA GGCAGAGGAG GGGCAGTAGA
TTGCAGTCTA GGAATTCAGC TAGCATTTTC TGGTACAGAC AAGCATCTAT CAGTGCTTAA TTCATGGTAT GAAGTGGAAA
ATCTGCGGCA GTACTCTCTC TACGGCTTGT ACTCAAATCT GAGGGACTCT CTCACCAGCC AGTATAACAA ATTCTTTTAA


>Vigan.06G156100.01
MAAKGALWLM MLPLVVPVVI ATNTNNVYQP CADAKIQRSD GFTFGIAFSS RESFFFNQSL QLSPCDHRLS LSSSNSQLAL
FRPKVDEISL LTINTSSFFP DSYGGYMVAF AGRKYAARSP LAFVANSTYT VTSFTLVLEF QKGRLQNLYW KRDGCSSCKG
KSNFVCLNKQ DCAIRTSSCK GRGGAVDCSL GIQLAFSGTD KHLSVLNSWY EVENLRQYSL YGLYSNLRDS LTSQYNKFF*