GBrowse Details

Vigan.06G160900.01

Basic Information:
Name: Vigan.06G160900.01
Multiple alignment
Variant Information
Position: Chr06:29379389..29386562 (+ strand)
Length: 7174
Functional Information:
Description: Similar to Uncharacterized protein. [I1LKN7, Glycine max]
GO: Biological Process: nitrogen compound metabolic process (GO:0006807)
Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810)
InterPro: Nitrilase/cyanide hydratase, conserved site (IPR000132)
Carbon-nitrogen hydrolase (IPR003010)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:152.13,72.33,20.53,37.78,18.06,64.54,29.92,23.44
Arabidopsis thaliana homolog: AT5G22300.1
Automatic updates:
Name: NM_001254658 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional nitrilase/nitrile hydratase NIT4-like (LOC100810230), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001426129 NCBI(nuccore)
Organism: Lupinus angustifolius
Description: Lupinus angustifolius bifunctional nitrilase/nitrile hydratase NIT4A (LOC109351736), mRNA.
PubMed ID: 25060816 NCBI(pubmed)
16786295 NCBI(pubmed)
Status: Known Variant
Name: NM_001426130 NCBI(nuccore)
Organism: Lupinus angustifolius
Description: Lupinus angustifolius bifunctional nitrilase/nitrile hydratase NIT4B (LOC109353638), mRNA.
PubMed ID: 25060816 NCBI(pubmed)
16786295 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:29379389..29379472 (+ strand)
Length: 84
Type: five_prime_UTR
Position: Chr06:29379473..29379617 (+ strand)
Length: 145
Type: CDS
Position: Chr06:29379782..29379961 (+ strand)
Length: 180
Type: CDS
Position: Chr06:29384378..29384671 (+ strand)
Length: 294
Type: CDS
Position: Chr06:29385306..29385587 (+ strand)
Length: 282
Type: CDS
Position: Chr06:29386147..29386298 (+ strand)
Length: 152
Type: CDS
Position: Chr06:29386299..29386562 (+ strand)
Length: 264
Type: three_prime_UTR


>Vigan.06G160900.01
TGAAGTTCCA TAAGAAAAGA AGGATCGTGA TGGTTGAAAC AAGAAGTAGA GAGGATCAGA AGAGAGTGTG AAGCTGTGAA
AGAGATGGCG CTCGTAACAA CAGAGCCAAC CATAAACGAA GGGCCTCTGT TCGCCGAAGT TGACATGGCT TCGGATTTCA
ACGCCCCCAC TGTTCGAGCC ACCGTTATTC AAGCTTCCAC CATCTTCTAC GACACTCCAG CCACTCTAGA TAAGGCAGAA
AGGTTGTTGG GTGAAGCCGC AGGGCATGGG TCCCAGCTTG TGGTGTTTCC AGAAGCGTTT GTGGGAGGGT ACCCGCGTGG
TTCCGATTTT GGGGTTTCTA TTGGAAATCG CACGGCCAAG GGAAGAGAAG AGTTTCGCAA GTATCATTCT GCAGCCATTG
ATGTGCCTGG TCCTGAAGTT GATAGATTAG CAACAATGGC AGGGAAGTAT AAAGTACATT TAGTGATGGG TGTGATAGAG
AGGGATGGCT ACACACTTTA TTGCACCGTT CTATTCTTTG ATTCTCAAGG TCATTACCTG GGAAAGCACA GGAAAATCAT
GCCAACGGCA TTGGAGCGGA TTATCTGGGG ATTTGGGGAT GGATCAACCA TTCCCGTGTT CGAAACTCCC ATTGGAAAGA
TAGGTGCTGC CATTTGCTGG GAAAACAGGA TGCCACTATT AAGGACTGCA ATGTATGCCA AAGGTATAGA GATATACTGT
GCTCCTACAG CTGATGCCAG GGATGTGTGG CAAGCATCAA TGACCCACAT TGCACTTGAA GGTGGATGTT TTGTTTTGTC
AGCAAACCAG TTCTGTAGGA GAAGGGATTA CCCTCCCCCT CCAGAGTATG TTTTTGCTGG CACAGAAGAG GACCTGACAC
CTGATTCTGT TGTATGTGCT GGGGGTAGTG TCATTATATC ACCATCAGGG GCTATTCTGG CTGGACCAAA TTATGATGGG
GAGGCACTAA TCTCAGCAGA CCTTGATCTA GGAGAAATAG CAAGAGCTAA GTTCGATTTT GATGTGGTTG GACACTATTC
AAGGCCAGAA GTGCTTAGCT TGACTGTAAA GGACCATCCA ACGAATCCAG TCACTTTTAC ATCAACATCA AAAAAAATTG
AGGACAACAC CAAGTAGTGT CTTTCTTTCA TGTTCAGCAA CTTCTGAACC TGACACCTTT GTATTTTAAC GTTTGTGTTT
CATATATGGA AGTTGTTTGG GCTTTAGCTT GTACTGTAAG CTCTTGCATT TTGGTTTGGT TTATATGACC ACATTAAAAG
GATAAATTCA GACACCAAAA TAAGGGTTTT CAAAATTCAG CTTTTTAAAG AAAAAACTAA ACTGAATGTT AAACAATTGT
GTACAAAGAG AACCTTTCTA TAAAAGTACT TTTGCTCGAA C

>Vigan.06G160900.01
ATGGCGCTCG TAACAACAGA GCCAACCATA AACGAAGGGC CTCTGTTCGC CGAAGTTGAC ATGGCTTCGG ATTTCAACGC
CCCCACTGTT CGAGCCACCG TTATTCAAGC TTCCACCATC TTCTACGACA CTCCAGCCAC TCTAGATAAG GCAGAAAGGT
TGTTGGGTGA AGCCGCAGGG CATGGGTCCC AGCTTGTGGT GTTTCCAGAA GCGTTTGTGG GAGGGTACCC GCGTGGTTCC
GATTTTGGGG TTTCTATTGG AAATCGCACG GCCAAGGGAA GAGAAGAGTT TCGCAAGTAT CATTCTGCAG CCATTGATGT
GCCTGGTCCT GAAGTTGATA GATTAGCAAC AATGGCAGGG AAGTATAAAG TACATTTAGT GATGGGTGTG ATAGAGAGGG
ATGGCTACAC ACTTTATTGC ACCGTTCTAT TCTTTGATTC TCAAGGTCAT TACCTGGGAA AGCACAGGAA AATCATGCCA
ACGGCATTGG AGCGGATTAT CTGGGGATTT GGGGATGGAT CAACCATTCC CGTGTTCGAA ACTCCCATTG GAAAGATAGG
TGCTGCCATT TGCTGGGAAA ACAGGATGCC ACTATTAAGG ACTGCAATGT ATGCCAAAGG TATAGAGATA TACTGTGCTC
CTACAGCTGA TGCCAGGGAT GTGTGGCAAG CATCAATGAC CCACATTGCA CTTGAAGGTG GATGTTTTGT TTTGTCAGCA
AACCAGTTCT GTAGGAGAAG GGATTACCCT CCCCCTCCAG AGTATGTTTT TGCTGGCACA GAAGAGGACC TGACACCTGA
TTCTGTTGTA TGTGCTGGGG GTAGTGTCAT TATATCACCA TCAGGGGCTA TTCTGGCTGG ACCAAATTAT GATGGGGAGG
CACTAATCTC AGCAGACCTT GATCTAGGAG AAATAGCAAG AGCTAAGTTC GATTTTGATG TGGTTGGACA CTATTCAAGG
CCAGAAGTGC TTAGCTTGAC TGTAAAGGAC CATCCAACGA ATCCAGTCAC TTTTACATCA ACATCAAAAA AAATTGAGGA
CAACACCAAG TAG

>Vigan.06G160900.01
MALVTTEPTI NEGPLFAEVD MASDFNAPTV RATVIQASTI FYDTPATLDK AERLLGEAAG HGSQLVVFPE AFVGGYPRGS
DFGVSIGNRT AKGREEFRKY HSAAIDVPGP EVDRLATMAG KYKVHLVMGV IERDGYTLYC TVLFFDSQGH YLGKHRKIMP
TALERIIWGF GDGSTIPVFE TPIGKIGAAI CWENRMPLLR TAMYAKGIEI YCAPTADARD VWQASMTHIA LEGGCFVLSA
NQFCRRRDYP PPPEYVFAGT EEDLTPDSVV CAGGSVIISP SGAILAGPNY DGEALISADL DLGEIARAKF DFDVVGHYSR
PEVLSLTVKD HPTNPVTFTS TSKKIEDNTK *