GBrowse Details

Vigan.06G166800.01

Basic Information:
Name: Vigan.06G166800.01
Multiple alignment
Variant Information
Position: Chr06:29926898..29930122 (+ strand)
Length: 3225
Functional Information:
Description: Similar to Uncharacterized protein. [I1LKS6, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,0.02,3.36,3.94,3.76,0.90,5.49,22.04
Arabidopsis thaliana homolog: AT1G08290.1
Automatic updates:
Name: NM_001254472 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein TRANSPARENT TESTA 1-like (LOC100802773), mRNA.
PubMed ID: -
Status: Known Variant
Name: PQ761026 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypothetical protein (Glyma.11G184000) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:29926898..29927042 (+ strand)
Length: 145
Type: five_prime_UTR
Position: Chr06:29927043..29927561 (+ strand)
Length: 519
Type: CDS
Position: Chr06:29929213..29929662 (+ strand)
Length: 450
Type: CDS
Position: Chr06:29929663..29930122 (+ strand)
Length: 460
Type: three_prime_UTR


>Vigan.06G166800.01
CAAAGCCTCC ATTCCTTAAT CAAACCATAT TATAAGTGCA GGCTTTCTAC CATAAAGTCT GAACATACAC ACACATATAC
ATAACATAAC ATAACCCTTT TCTGAGGAAG AGAGAAGATA ATTCTCTAAA TCCAACAAGG GTTTGATGGA GTGCAATGTG
GAGAACAATA AGAATCTATA CCTTCATGCT CCTACTTTCA TTGAGTGGCT CAAACCATGT TCTTCTCCTT CATATCTAAA
TTCCAACACA ATATCTACTT CTTCTTCTTC TTCTTCTTCA TCTTTTTTTT CTTCTTTTTC CTTCACCCAG CATGACCTTG
TTCATGAAAC CATCCAATTC TTGCCCATTG AGGCCTCAAA AGATGAAGCC CACCATCAAA GTTTTGAGGT GAAAGAGGAA
AAGCTTGAAC AAGTCACTGT GGCTTTGCAC ATTGGTTTGC CTGACAGTGC TAAAAGGCAT CATGAGGTTG TTGATGATGA
TGATGAGAAG ATGATTTTCC ATGTCAAGGA AGAAGAAGCT TCCTCCAAGA GAAGCTTCCA TGGCTGCTCC TTTAACCAAG
AGAGAAGGTT CTGGATTCCA ACCCCAGCTC AGATCCTCGT TGGACCGATG CAGTTTGCTT GCTCCATATG CAGCAAAACC
TTCAATAGGT ATAACAACAT GCAGATGCAT ATGTGGGGTC ATGGATCAGA ATTTAGGAAA GGACCAGATT CACTGAAAGG
AACACAACCA GCAGCAATGT TAAGGTTGCC ATGTTACTGC TGCGCGCAGG GTTGCAAGAA CAACATCAAC CATCCAAGGG
CGAAGCCTTT GAAGGACTTC AGAACCCTCC AAACGCACTA CAAAAGGAAG CACGGCACAA AGCCTTTTAT GTGCAGAAAA
TGTGGGAAAA CATTTGCAGT GAAAGGTGAT TGGAGGACTC ACGAGAAGAA CTGTGGCAAG TTGTGGTACT GCACTTGTGG
CTCAGACTTC AAGCACAAAA GATCACTTAA GGACCATATT AGGTCCTTTG GAAAGGGACA CAACCCTCAT CCTCCCTTTG
AAGCTTTTGA GGATGAGAAG GAATGCATCA CTGGCTCTGA TGAAGATGAG CTCAATGCTC ATCATCATGC ATGATCTGAT
TAACATTCTA CAGCTTTTCC TCATTACCAA ACAAAAAAGT TGCAGACAAA TGTGGTGGAT GCAGCTATGG TTTTAGAACC
TTGAGTAGTG GTAATTGTAG TAGAGAGAGT TTGGTCAGTA CCCTTGTGCT CAGTAACAAA AAATTCTCAA CAATGCTGAG
ACATGAAGGC TCAGGGAAAG GTTTGCTACC GAGCACTCGC AGGGTGGTGA TGAGCTATCA GTAGAGGTTT GAACTGAATT
TGCATGCTTT TGGTTAGCTA ATAAGATGGT GCCTCAAGTG ATGAAGTAGA TGAATTTTCT TGGCATAGTC ACAGAGACAA
AGTGTTATGT CATGTTTACT TTTCTGTAAA ATATGGAGGA AATTTATCCG CTTCATTACT CAATGGTAAC CCTCATTCTA
GGACTTTATA ATACCATGTA AAGTCTTGTT TAAATATTTC TTATGAATTT GCTG

>Vigan.06G166800.01
ATGGAGTGCA ATGTGGAGAA CAATAAGAAT CTATACCTTC ATGCTCCTAC TTTCATTGAG TGGCTCAAAC CATGTTCTTC
TCCTTCATAT CTAAATTCCA ACACAATATC TACTTCTTCT TCTTCTTCTT CTTCATCTTT TTTTTCTTCT TTTTCCTTCA
CCCAGCATGA CCTTGTTCAT GAAACCATCC AATTCTTGCC CATTGAGGCC TCAAAAGATG AAGCCCACCA TCAAAGTTTT
GAGGTGAAAG AGGAAAAGCT TGAACAAGTC ACTGTGGCTT TGCACATTGG TTTGCCTGAC AGTGCTAAAA GGCATCATGA
GGTTGTTGAT GATGATGATG AGAAGATGAT TTTCCATGTC AAGGAAGAAG AAGCTTCCTC CAAGAGAAGC TTCCATGGCT
GCTCCTTTAA CCAAGAGAGA AGGTTCTGGA TTCCAACCCC AGCTCAGATC CTCGTTGGAC CGATGCAGTT TGCTTGCTCC
ATATGCAGCA AAACCTTCAA TAGGTATAAC AACATGCAGA TGCATATGTG GGGTCATGGA TCAGAATTTA GGAAAGGACC
AGATTCACTG AAAGGAACAC AACCAGCAGC AATGTTAAGG TTGCCATGTT ACTGCTGCGC GCAGGGTTGC AAGAACAACA
TCAACCATCC AAGGGCGAAG CCTTTGAAGG ACTTCAGAAC CCTCCAAACG CACTACAAAA GGAAGCACGG CACAAAGCCT
TTTATGTGCA GAAAATGTGG GAAAACATTT GCAGTGAAAG GTGATTGGAG GACTCACGAG AAGAACTGTG GCAAGTTGTG
GTACTGCACT TGTGGCTCAG ACTTCAAGCA CAAAAGATCA CTTAAGGACC ATATTAGGTC CTTTGGAAAG GGACACAACC
CTCATCCTCC CTTTGAAGCT TTTGAGGATG AGAAGGAATG CATCACTGGC TCTGATGAAG ATGAGCTCAA TGCTCATCAT
CATGCATGA

>Vigan.06G166800.01
MECNVENNKN LYLHAPTFIE WLKPCSSPSY LNSNTISTSS SSSSSSFFSS FSFTQHDLVH ETIQFLPIEA SKDEAHHQSF
EVKEEKLEQV TVALHIGLPD SAKRHHEVVD DDDEKMIFHV KEEEASSKRS FHGCSFNQER RFWIPTPAQI LVGPMQFACS
ICSKTFNRYN NMQMHMWGHG SEFRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HYKRKHGTKP
FMCRKCGKTF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHNPHPPFEA FEDEKECITG SDEDELNAHH
HA*