GBrowse Details

Vigan.06G169200.01

Basic Information:
Name: Vigan.06G169200.01
Multiple alignment
Variant Information
Position: Chr06:30211179..30215005 (+ strand)
Length: 3827
Functional Information:
Description: Similar to RAB6-interacting golgin-like. [XP_004487521.1, Cicer arietinum]
InterPro: Transcriptional activator, plants (IPR007033)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.59,1.80,1.74,1.88,0.16,0.79,1.46,7.20
Arabidopsis thaliana homolog: AT2G27740.1
Automatic updates:
Name: NM_001251620 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499699 (LOC100499699), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100796368 (LOC100796368), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:30211179..30212281 (+ strand)
Length: 1103
Type: five_prime_UTR
Position: Chr06:30212282..30212539 (+ strand)
Length: 258
Type: CDS
Position: Chr06:30212927..30213037 (+ strand)
Length: 111
Type: CDS
Position: Chr06:30213890..30213970 (+ strand)
Length: 81
Type: CDS
Position: Chr06:30214068..30214142 (+ strand)
Length: 75
Type: CDS
Position: Chr06:30214143..30215005 (+ strand)
Length: 863
Type: three_prime_UTR


>Vigan.06G169200.01
GAAAAATATT ATCTTAAAAA TGAAAGATGA TTATAAGATA ATGCTGTGTT TTCACTTTTC ACTTTTCACA CCTAGATTCA
TCGAGTGGAA CTCAATGGTG CTTGGCCCAG TGTAATGCGA GTGAGCAATT ATTTAGAACA TAAGCTGGAA GCTCCTCTCT
TACAGTGCCA AGCTGTGTGA GTATGTGACT TTCTGTTCCA GAAAATGCAT TTTTGGGCTG GTCGTCCATA TGGGTAATAA
TTTTCTATAA AGGCAACTGG GTACTGCCAG TTCTCCTACT CTGTCTTGCT TCCTAAGGCT CTCCCACATT CAAGCTTTAT
ATATCAGTAG GTGACCCTTT CTGTTCACTC CTCAACCAAA ACTTATGGTC CAAGCACTTT TCTATCTTAA AGAAAGCACT
TATATAATTA CCAATGCTCC TTAGAAACTT CTTAAGAAAA ATACCTATAT ATATGCTACC TTAAAAGATC TAAAAATATT
TGCCATATTA AAAGTGGTAA AAAGATGATA TGATCCTCCA AGTTACCTTG GGGAAGCAGG TATATAGCTA CATATATACA
CGCGTCTGTG TAAATTTTTT GGTCCATACA TCAACTATTG ATACCATGTT GAGGAACAGT CGTTAGCTGA ATATGCCAAT
ATACCAACTT GAGAAAATTG CTACCTAACC AAAGCACTCT CATAAAGATT CTTCACTAAG TTTTCAGAGA ATAATAAAAG
GAGAAGTGTA GTCAAAGATT AACATTTATA CTCTCAACGT ATAACACCTT CCAAATCCAA TACTAGAACT TTGATGGTGC
CATAATCAAG TTGGCTTGTG AATAAAGTTG ACAGGGAAAA CACTAAGTAT TTGTTTAGAG AAGATAAATC CACTGTTAAC
TTCATAGCTT TTGGCAGTCA TATCTGTCAT TTGGGCTTAT TCTAAGGTTT GTTAACAACA CAAACTACTT GCTCTCACAC
CCTTAAAGCC AGTCCTGTTT ATAAGCACCT TAGGGGAAAG TGGAGCCATC ATTCCAAGGA AAAGAGAAAA AAAAAACAGA
GAAAGAAAAC GGGAGATAAC AGGCCTGGGA GAGGAAAAGA GTGTTATTGA CTGTGGTGCA ATAATGGCAA CACCAAAACA
GCCATATGAG CAACACCAAC AACAAACAAA TGTGCAGCGT GTGAGAAATT CAGGGATGAT TAACGTCAAC CAGAGTCCAA
TGAGGGATGA CAAGGAAGAG GAGATGTCAA GATCAGCTTT GGCAATGTTC AGAGCAAAGG AAGAAGAAAT TGAGAGGAAG
AAAATGGAGG TGAGGGATAA GGTTCACGCT TATCTGGGTC GAGTAGAGGA GGAAACAAAA CGCTTGGCTG AGATTAGAGA
AGAGCTTGAG GGTCTGACAG ATCCATTGAG GAAGGAAGTT GCAATGGTTA GAAAGAAGAT AGACAGTGTG AACAAAGAGT
TAAAGCCACT GGGCCAAACC TGCCAGAGAA AGGAAAAAGA ATATAAGGAA GCCCTTGATG CTTTCAATGA GAAAAACAAG
GAAAAAGCTC AACTTGTTAC CAAACTAATG GAGCTGGTGA CTGAAAGTGA GAAGTTGAGG ATGAAGAAGT TGGAGGAGTT
AAGCAAAAAC GTAGATACCC TGAACTGAAA TTAATGCTAA TACAAGTAAC CTTACTTCTG TGTGATGTAA CTAGAACCAT
GTGGTTGTAT TGTAATGTGA CATAATTTGT GATTTCATTG TATTTTGAGA ATTTGATTAG GAAATCTGCA TTAGACAGAC
ACCTAAATTC TGAACATTGC AAAAGTTCTT GTCATTTGAT TGAGATGTGT ATTCAAACTG AACATTCAGA AACATCTATT
TTTTTTTGGG TTAAATATGT ATTTCGTCTC TTAAGTATCA CATGATTTTG GTTTTAGTCC CTACTCGAAA CTTTGATGGT
TTTTAGTCCT CATAATTTTG AAACTCTTAC TATTAGTCCT TAAAGTTGGA TGGCGTTAGC TTTTGTTTGA CGTGGCTAAT
GGTCAGCCCA CGTGTCATGT CACCTGACTA CTTTTAATTG ATGTGGCAGT AAAGGTGTGG TGGTCGGTCG GCCTGGTGGG
AGGTCAGCCA CTCGGTCTGG TGGTCGGCAT GGTGGTCTTT GCCCATAACA GCTCGGTCTT TGCCCAACAC CGTTCGGTCT
TTTACATAGT CCGCTTCTAT TGTGTTCTGT TGATTGTAAT AGAACCCACC AAGCCGACCG ACCACCAGAC CGAGTGATCG
ACCACCCACC AGACCGCTAC ACCTTTACTG CCACGTCAAT TAAAAATAGT CAGGAAAGGT GACATCACAC GTGGACTGAC
AGTTAGCCAC ATATATTAAA AGTTAACGTC ATTCAATTTT AAGGACTAAC ACTAAAAGTT TCAAAACTAT GAGAATTAAA
AACTATCAAA GTTTTGAGTA TGGTCTAAAA CCAAAATCGC GTTATAGAGA AAAACATATT TAACCTTTTT TTTTATGAAT
GAAAATATTC C

>Vigan.06G169200.01
ATGGCAACAC CAAAACAGCC ATATGAGCAA CACCAACAAC AAACAAATGT GCAGCGTGTG AGAAATTCAG GGATGATTAA
CGTCAACCAG AGTCCAATGA GGGATGACAA GGAAGAGGAG ATGTCAAGAT CAGCTTTGGC AATGTTCAGA GCAAAGGAAG
AAGAAATTGA GAGGAAGAAA ATGGAGGTGA GGGATAAGGT TCACGCTTAT CTGGGTCGAG TAGAGGAGGA AACAAAACGC
TTGGCTGAGA TTAGAGAAGA GCTTGAGGGT CTGACAGATC CATTGAGGAA GGAAGTTGCA ATGGTTAGAA AGAAGATAGA
CAGTGTGAAC AAAGAGTTAA AGCCACTGGG CCAAACCTGC CAGAGAAAGG AAAAAGAATA TAAGGAAGCC CTTGATGCTT
TCAATGAGAA AAACAAGGAA AAAGCTCAAC TTGTTACCAA ACTAATGGAG CTGGTGACTG AAAGTGAGAA GTTGAGGATG
AAGAAGTTGG AGGAGTTAAG CAAAAACGTA GATACCCTGA ACTGA

>Vigan.06G169200.01
MATPKQPYEQ HQQQTNVQRV RNSGMINVNQ SPMRDDKEEE MSRSALAMFR AKEEEIERKK MEVRDKVHAY LGRVEEETKR
LAEIREELEG LTDPLRKEVA MVRKKIDSVN KELKPLGQTC QRKEKEYKEA LDAFNEKNKE KAQLVTKLME LVTESEKLRM
KKLEELSKNV DTLN*