VIGGS:GBrowse

Vigan.06G169700.01

Basic Information:

Name:	Vigan.06G169700.01 Multiple alignment Variant Information
Position:	Chr06:30280102..30281471 (+ strand)
Length:	1370

Functional Information:

Description:	Similar to Stress responsive A/B Barrel Domain. [XP_007015930.1, Theobroma cacao]
InterPro:	Dimeric alpha-beta barrel (IPR011008)
InterPro:	Stress responsive alpha-beta barrel (IPR013097)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.14,1.74,42.93,1.22,0.08,51.45,13.12,67.87

Automatic updates:

Name:	NM_001249229 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max stress-response A/B barrel domain-containing protein (LOC100306003), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:30280102..30280430 (+ strand)
Length:	329
Type:	five_prime_UTR

Position:	Chr06:30280431..30280549 (+ strand)
Length:	119
Type:	CDS

Position:	Chr06:30281045..30281243 (+ strand)
Length:	199
Type:	CDS

Position:	Chr06:30281244..30281471 (+ strand)
Length:	228
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G169700.01
GGCCAACACA TAACTCAAAC TTCTAGAGGG AAATGACCCC AAAGCTGTGT CCTTCATGCA CAATGACAAT TACACCAGAC
AACTTTTACT GTGCAAATAT GGAGAAGAAG TTGCACCATG GTGGGTCTAT GTTTCAAACC AGTACCTTTC CTCATATTCA
ACCGTGGATT ATGTCCCCAA TTACTTTTTT GCGGTGAAAT TGGTCTTTTA TGATCACAGT GTACAAATAG GGACTGTAAA
ATAGTTTTTG CCTGCATGAT GTAGCTTTTC TGCATATATA TGTGGCTCCT AGCAACTACA CTTTTGGTTA TAAGACTTGT
GTTGCAGCTA TGGGATCTTT TAATCACTAT GTGATTGTTA AGTTTAAGGA TGGTGTGGAA GTTGAAGAAC TCATTCAAGG
GTTGGAGAAG ATGGCATCTG AAATTGATCA AGTCAAATCC TTTGAATGGG GAAAGGACAT AGAAAGCCAT GAAATGCTAA
GACAAGGTTT CACTCATGTT TTCTTGATGG CATTCAATGG AAAAGAGGAG TTCAATGCAT TTCAGACTCA TCCCAATCAT
GTTGAGTTCT CAGGAGTGTT TTCACCAGCT ATTGAGAAGA TTGTGGTGCT GGATTTTCCA TCTAAGCTTG TCAAAGCACC
AGCATGATCC TCAACTTATT CAAGCAATTA AACTTTCCAT CTTTAAAGTG CATGCATGCG TGTGCATCTG TTATGGTTGT
TCCTAGTATT CCTACATGTT CTTGTGCAAT TTCAACTCTC CTTTTTTCCT GATTAATGAA AGTTCTGGCA GTTCAATTGG
TTAATACTAT GAAAATGTTT CATGTGGAAA ACAGCAAGAT CTAATACTAT TAATTCTCTC CATGTTTCTA CCGCA

[show][hide][copy]CDS

>Vigan.06G169700.01
ATGGGATCTT TTAATCACTA TGTGATTGTT AAGTTTAAGG ATGGTGTGGA AGTTGAAGAA CTCATTCAAG GGTTGGAGAA
GATGGCATCT GAAATTGATC AAGTCAAATC CTTTGAATGG GGAAAGGACA TAGAAAGCCA TGAAATGCTA AGACAAGGTT
TCACTCATGT TTTCTTGATG GCATTCAATG GAAAAGAGGA GTTCAATGCA TTTCAGACTC ATCCCAATCA TGTTGAGTTC
TCAGGAGTGT TTTCACCAGC TATTGAGAAG ATTGTGGTGC TGGATTTTCC ATCTAAGCTT GTCAAAGCAC CAGCATGA

[show][hide][copy]PROTEIN

>Vigan.06G169700.01
MGSFNHYVIV KFKDGVEVEE LIQGLEKMAS EIDQVKSFEW GKDIESHEML RQGFTHVFLM AFNGKEEFNA FQTHPNHVEF
SGVFSPAIEK IVVLDFPSKL VKAPA*