GBrowse Details

Vigan.06G174900.01

Basic Information:
Name: Vigan.06G174900.01
Multiple alignment
Variant Information
Position: Chr06:30921295..30925924 (+ strand)
Length: 4630
Functional Information:
Description: Similar to Lethal leaf spot 1-like protein. [T2DME4, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537)
InterPro: Pheophorbide a oxygenase (IPR013626)
Rieske [2Fe-2S] iron-sulphur domain (IPR017941)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.68,9.28,30.70,82.42,1.90,25.17,2.96,14.34
Arabidopsis thaliana homolog: AT3G44880.1
Automatic updates:
Name: NM_001249954 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max lethal leaf spot 1-like protein (LOC778121), mRNA.
PubMed ID: 16927199 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:30921295..30921799 (+ strand)
Length: 505
Type: five_prime_UTR
Position: Chr06:30921800..30922252 (+ strand)
Length: 453
Type: CDS
Position: Chr06:30922670..30922905 (+ strand)
Length: 236
Type: CDS
Position: Chr06:30923047..30923173 (+ strand)
Length: 127
Type: CDS
Position: Chr06:30923736..30923872 (+ strand)
Length: 137
Type: CDS
Position: Chr06:30924515..30924674 (+ strand)
Length: 160
Type: CDS
Position: Chr06:30925121..30925396 (+ strand)
Length: 276
Type: CDS
Position: Chr06:30925553..30925807 (+ strand)
Length: 255
Type: CDS
Position: Chr06:30925808..30925924 (+ strand)
Length: 117
Type: three_prime_UTR


>Vigan.06G174900.01
TTCTCAATTT CTTTCTTGTT TGAAACAAGT ACACACATGA ACATGGACAG ATTTCACCGT TTTCAGTGTC TTCTTTTCCC
TTCTACAAAC AAATACTCAC CCACGTGGTA GATACCCTTC AAACTTGTGG ACATGAATCA TTCCACCGAA TGGTTTCACT
TCTTTTCCTC CGCTGGAAAA TAAAACAACA AAATTTCTCA AAATACTAAT TAGAAACAGA CATCGACGCA AAACTTTTCC
AAGTTTTATT TTACTTCGTA AATTTTACAG TAAGCACTCG CTAATTTAGT TAATTAGCTA AACTAAGAAA ATTAAAGTTC
TCAGAGAATG ACACATCTGA ACAGTGTTTT GTCTGAAACC GAAAGAGCTG AAGAAAGAAA CATTCGAAGC TTGCACGACT
CAAAAACCTT GGTCTTCGAT TCTCTTCTTA ACATATCCCG CTTGAACCTC TGTGTACAAT TCCTCGAACC TTAACGTCTC
AGAAAAATTA ACTACAAAAC CATTGATGGC ACTCCCACAC TCCATCTCTG CGTTATCAAC CACACTCACG CTTTCCTCCT
CAGTGAGCAA ACTCACCACC AATAAACTGA ATTCCTTTCC CTTCTTCTCG AACAAGGGTA CGCAATTTTT CACGAAACAA
ACTCGACCCA GAAGCGGAAG AAGCCCTTTG CTTACCCCTG CACGCGTTGC GGCGCCACCC TCAACGGCTG AAACCGATCA
GTTGTTCCCT GAAACCGAAA AGGAGGAGAC TGAGGAAGAG TTTAACGAGG AGAGCTCTTC CTCTAAGTTC ACCTGGAGGG
ATCACTGGTA CCCTGTTTCG TTAATTGAGG ATCTGAACCC TCTCTTACCC ACACCGTTTC AGCTTCTGGG TCGTGAAATC
GTGCTCTGGT ACGACAAGTC CACTTCCCAA TGGGTTGCTT TTGATGACAA ATGCCCCCAT CGTCTTGCCC CTTTATCTGA
AGGAAGGATT GATGAAGATG GGAAGTTGCA GTGTTCTTAC CATGGGTGGT CTTTTGATGG TTGTGGATCT TGTGTTAAGA
TTCCTCAGGC TGCATCCGAA GGTCCAGAAG CACGTGCTCT TCGATCTCCT AAAGCGTGTG CCACTAGGTT CCCTACTTTA
GTGTCTCAGG GATTGCTCTT TGTTTGGCCT GATGAAAATG GTTGGGAGAA AGCAAGTGCC TCCAAGCCTC CAATGTTGCC
TGATGACTAT GAAAACCCGG AGTTTGCCAC TGTGAATATT CAGCGTGACC TGTTCTATGG TTACGATACT CTAATGGAGA
ATGTCTCTGA TCCTTCTCAC ATTGATTTTG CTCATCACAA GGTCACAGGA AGGAGGGACA GAGCCAAGCC TCTGCCATTC
AAGATGGATG CTCGTGGTTC ATGGGGCTTT TCTGGAGCGA ATGAAGGGAA CCCTAAAATC AGTGCTAAAT TTGTTGCGCC
TTGTTATTAT ATGAACAAGA TTGAGATTGA TACCAAACTC CCTGTAGTTG GTGATCAGAA ATGGGTTGTA TGGATATGTT
CCTTCAATGT CCCCATGGCA CCTGGTAAGA CTCGCTCCAT AGTTTGCAGT GCTCGAAACT TCTTCCAGTT CACAGTGCCA
GGGCCTGCCT GGTGGCAAGT AGTTCCTAGA TGGTATGAGC ATTGGACTTC GAACAAGGTA TATGATGGGG ACATGATAGT
TCTTCAAGGG CAAGAGAAAA TCTTCCTTTC ACAAACCAAG GAAGGAGGCG ACATTAACAA ACAGTACACC AGCATCACCT
TCACACCAAC ACAGGCAGAT CGCTTTGTCT TGGCATTTCG AAACTGGCTG AGGCGACATG GCAATGGCCA ACCAGAATGG
TTTGCCAACA TCAGCAACCT GCCATTGCCA TCAACAGTTT TATCCAAACG TGAGATGATG GATAGATTTG AACAGCATAC
TCTGAAGTGT TCATCATGTA AAGGAGCTTA CGAGGGATTC CAAATATGGC AGAAAGTCCT AATTGGTGCA ACAGTTATGT
TTTGTGCAAC ATCAGGGATC CCAGCAGATG TCCAGTTTCG TGTTCTTTTG GCAGGACTTG CAATTGTCAG CGCTGCCTTA
GCTTTTACCC TAAACCAGCT CCAAAAGAAT TTTGAATTTG TCGATTACGT TCATGCAGAA ATCGAATAAA CACTGATTTC
CACGTTAATT GTAAATAGAG TTGAAGAAAG ATTACATGTA TTCATACTAT TTTGATGAAA AGAGCTTAGT TCTACACAAT
CTTGAAATTT AAGACATGAA ACAAGG

>Vigan.06G174900.01
ATGGCACTCC CACACTCCAT CTCTGCGTTA TCAACCACAC TCACGCTTTC CTCCTCAGTG AGCAAACTCA CCACCAATAA
ACTGAATTCC TTTCCCTTCT TCTCGAACAA GGGTACGCAA TTTTTCACGA AACAAACTCG ACCCAGAAGC GGAAGAAGCC
CTTTGCTTAC CCCTGCACGC GTTGCGGCGC CACCCTCAAC GGCTGAAACC GATCAGTTGT TCCCTGAAAC CGAAAAGGAG
GAGACTGAGG AAGAGTTTAA CGAGGAGAGC TCTTCCTCTA AGTTCACCTG GAGGGATCAC TGGTACCCTG TTTCGTTAAT
TGAGGATCTG AACCCTCTCT TACCCACACC GTTTCAGCTT CTGGGTCGTG AAATCGTGCT CTGGTACGAC AAGTCCACTT
CCCAATGGGT TGCTTTTGAT GACAAATGCC CCCATCGTCT TGCCCCTTTA TCTGAAGGAA GGATTGATGA AGATGGGAAG
TTGCAGTGTT CTTACCATGG GTGGTCTTTT GATGGTTGTG GATCTTGTGT TAAGATTCCT CAGGCTGCAT CCGAAGGTCC
AGAAGCACGT GCTCTTCGAT CTCCTAAAGC GTGTGCCACT AGGTTCCCTA CTTTAGTGTC TCAGGGATTG CTCTTTGTTT
GGCCTGATGA AAATGGTTGG GAGAAAGCAA GTGCCTCCAA GCCTCCAATG TTGCCTGATG ACTATGAAAA CCCGGAGTTT
GCCACTGTGA ATATTCAGCG TGACCTGTTC TATGGTTACG ATACTCTAAT GGAGAATGTC TCTGATCCTT CTCACATTGA
TTTTGCTCAT CACAAGGTCA CAGGAAGGAG GGACAGAGCC AAGCCTCTGC CATTCAAGAT GGATGCTCGT GGTTCATGGG
GCTTTTCTGG AGCGAATGAA GGGAACCCTA AAATCAGTGC TAAATTTGTT GCGCCTTGTT ATTATATGAA CAAGATTGAG
ATTGATACCA AACTCCCTGT AGTTGGTGAT CAGAAATGGG TTGTATGGAT ATGTTCCTTC AATGTCCCCA TGGCACCTGG
TAAGACTCGC TCCATAGTTT GCAGTGCTCG AAACTTCTTC CAGTTCACAG TGCCAGGGCC TGCCTGGTGG CAAGTAGTTC
CTAGATGGTA TGAGCATTGG ACTTCGAACA AGGTATATGA TGGGGACATG ATAGTTCTTC AAGGGCAAGA GAAAATCTTC
CTTTCACAAA CCAAGGAAGG AGGCGACATT AACAAACAGT ACACCAGCAT CACCTTCACA CCAACACAGG CAGATCGCTT
TGTCTTGGCA TTTCGAAACT GGCTGAGGCG ACATGGCAAT GGCCAACCAG AATGGTTTGC CAACATCAGC AACCTGCCAT
TGCCATCAAC AGTTTTATCC AAACGTGAGA TGATGGATAG ATTTGAACAG CATACTCTGA AGTGTTCATC ATGTAAAGGA
GCTTACGAGG GATTCCAAAT ATGGCAGAAA GTCCTAATTG GTGCAACAGT TATGTTTTGT GCAACATCAG GGATCCCAGC
AGATGTCCAG TTTCGTGTTC TTTTGGCAGG ACTTGCAATT GTCAGCGCTG CCTTAGCTTT TACCCTAAAC CAGCTCCAAA
AGAATTTTGA ATTTGTCGAT TACGTTCATG CAGAAATCGA ATAA

>Vigan.06G174900.01
MALPHSISAL STTLTLSSSV SKLTTNKLNS FPFFSNKGTQ FFTKQTRPRS GRSPLLTPAR VAAPPSTAET DQLFPETEKE
ETEEEFNEES SSSKFTWRDH WYPVSLIEDL NPLLPTPFQL LGREIVLWYD KSTSQWVAFD DKCPHRLAPL SEGRIDEDGK
LQCSYHGWSF DGCGSCVKIP QAASEGPEAR ALRSPKACAT RFPTLVSQGL LFVWPDENGW EKASASKPPM LPDDYENPEF
ATVNIQRDLF YGYDTLMENV SDPSHIDFAH HKVTGRRDRA KPLPFKMDAR GSWGFSGANE GNPKISAKFV APCYYMNKIE
IDTKLPVVGD QKWVVWICSF NVPMAPGKTR SIVCSARNFF QFTVPGPAWW QVVPRWYEHW TSNKVYDGDM IVLQGQEKIF
LSQTKEGGDI NKQYTSITFT PTQADRFVLA FRNWLRRHGN GQPEWFANIS NLPLPSTVLS KREMMDRFEQ HTLKCSSCKG
AYEGFQIWQK VLIGATVMFC ATSGIPADVQ FRVLLAGLAI VSAALAFTLN QLQKNFEFVD YVHAEIE*