GBrowse Details

Vigan.06G176600.01

Basic Information:
Name: Vigan.06G176600.01
Multiple alignment
Variant Information
Position: Chr06:31125373..31127516 (- strand)
Length: 2144
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [C5G5Y5, Phaseolus angularis]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.02,2.02,0.13,4.44,6.14,72.11,9.41
Automatic updates:
Name: NM_001329830 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis xyloglucan endotransglucosylase/hydrolase protein 31-like (LOC108339773), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:31125373..31125748 (- strand)
Length: 376
Type: three_prime_UTR
Position: Chr06:31125749..31126106 (- strand)
Length: 358
Type: CDS
Position: Chr06:31126400..31126617 (- strand)
Length: 218
Type: CDS
Position: Chr06:31126718..31126818 (- strand)
Length: 101
Type: CDS
Position: Chr06:31126965..31127193 (- strand)
Length: 229
Type: CDS
Position: Chr06:31127194..31127516 (- strand)
Length: 323
Type: five_prime_UTR


>Vigan.06G176600.01
TCCATTCAAG TGGTACATTA TAATTTGCAA GTTTATACCA AACAGGTATT CACTTGAAAA GGAAGTTCCC CCCCCTTGAA
GAAATTACAC AGAAAAAGCC CACACCTTAA CTTCAAAATA TTCCCCTATG GTTACCACAA ATGTGATAAG TTTTTGTCAT
CATGTGTAAC TCCCCAATCA ACTAACATAT CACCTTTTTG GAATAGTAGG GCCTTGAACC CCTATATATA TCATACTCTG
TAGCCATAAC TCTTTCATAA CTATCACTTA CCTAAAACCT TCAGCCCCAC CCTGCATTTT AGCAGAGTCA TTTTGTTCCT
ACAATGTCAT CATCACTATC CTCTTTCCTC CCAATGCTTC CTGTTCTCTT CCTTCTTGTA CTCTCATGTA TGATTTATTC
TGGTTCTGCT CAGGGACCAC CTTCACCTGG CTACTACCCC AGTTCCAAAA TTAGTCCTAT TAGCTTCAAT CAAGGCTTTA
AAAACCTTTG GGGACCTCAG CATCAGAGAA TAGACCAAGG CTCATTGACA ATATGGCTAG ACACTAGCAC AGGGAGTGGA
TTCAAGTCAC TTCACTCTTA CAAGTCTGGA TACTTTGGTG CTGCAATTAA GCTTCAACCT GGTTACACGG CAGGAGTCAT
TACATCTCTC TACCTTTCAA ACAACCAAGA CCACCCCGGA AACCACGATG AAATTGACAT AGAGTTCCTT GGTACCACGC
CAGACAAGCC ATATGTCTTG CAGACAAATG TATACATCAG AGGAAGTGGA GATGGGAATA TTATAGGAAG AGAAATGAGG
TTTCATCTCT GGTTTGACCC AACACAGGAT TTTCACAACT ATGCAGTTCT ATGGAAACCT TCTGAGTTAA TATTTTTTGT
GGATGATGTT CCAATAAGAA GGTATCCAAG GAAAAGTGAG GCCACATACC CTACAAGGCC AATGTATGTG TATGGGTCAA
TATGGGATGC ATCTTCTTGG GCAACAGAGG GTGGAAAATA CAAAGCTGAT TACAGATACC AACCCTTCGT TGGTAGGTAC
AAAAACTTCA GACTTCAAGG TTGCACCAGT GAAAGCTCTG CCTCATGCCA CCCACCTTCT ACATCTTCTG GCTTCGGAAG
TCTGAGCCCT CAGCAGTTCA GGGCCATGCA ATGGGTCCAA ACCAACTACA TGGTGTACAA CTATTGCCAT GATCCTAGGA
GAGACCACAA TCTGATCCCA GAATGCTGAG CCAAAGTTGT TTTTCATGTT GGTGTGTCTC AATTCTATGT TACCCTTTAT
ATACTTAAAA ATTGAAACTT TGAAACGGTG TTGGGGTGGT TTTTGTGATG GTCCCATTGC TAAGTGTAAT TGCAAGGGTA
GTTGAACGTC CATGCCACTC CAATGATTGG AATGTTTTGT TTTGTTGCGT TGTGTCATTG TGTTATTGTA GTAATGTTTT
GGGTCCAATA GTGTCGAAAT AAATTGATAA GAATGCTTTT CTGATACGTG TATGGGTGTG AAAAGTGACA TTGAGAGAAA
GGACATGCTC CCTTGTAAGC AAATTCTTAT ATTTTTTCAT TTTGGATATT ATTAAATAAA TTTTTACAAA CGTTTTATTC
TACAA

>Vigan.06G176600.01
ATGTCATCAT CACTATCCTC TTTCCTCCCA ATGCTTCCTG TTCTCTTCCT TCTTGTACTC TCATGTATGA TTTATTCTGG
TTCTGCTCAG GGACCACCTT CACCTGGCTA CTACCCCAGT TCCAAAATTA GTCCTATTAG CTTCAATCAA GGCTTTAAAA
ACCTTTGGGG ACCTCAGCAT CAGAGAATAG ACCAAGGCTC ATTGACAATA TGGCTAGACA CTAGCACAGG GAGTGGATTC
AAGTCACTTC ACTCTTACAA GTCTGGATAC TTTGGTGCTG CAATTAAGCT TCAACCTGGT TACACGGCAG GAGTCATTAC
ATCTCTCTAC CTTTCAAACA ACCAAGACCA CCCCGGAAAC CACGATGAAA TTGACATAGA GTTCCTTGGT ACCACGCCAG
ACAAGCCATA TGTCTTGCAG ACAAATGTAT ACATCAGAGG AAGTGGAGAT GGGAATATTA TAGGAAGAGA AATGAGGTTT
CATCTCTGGT TTGACCCAAC ACAGGATTTT CACAACTATG CAGTTCTATG GAAACCTTCT GAGTTAATAT TTTTTGTGGA
TGATGTTCCA ATAAGAAGGT ATCCAAGGAA AAGTGAGGCC ACATACCCTA CAAGGCCAAT GTATGTGTAT GGGTCAATAT
GGGATGCATC TTCTTGGGCA ACAGAGGGTG GAAAATACAA AGCTGATTAC AGATACCAAC CCTTCGTTGG TAGGTACAAA
AACTTCAGAC TTCAAGGTTG CACCAGTGAA AGCTCTGCCT CATGCCACCC ACCTTCTACA TCTTCTGGCT TCGGAAGTCT
GAGCCCTCAG CAGTTCAGGG CCATGCAATG GGTCCAAACC AACTACATGG TGTACAACTA TTGCCATGAT CCTAGGAGAG
ACCACAATCT GATCCCAGAA TGCTGA

>Vigan.06G176600.01
MSSSLSSFLP MLPVLFLLVL SCMIYSGSAQ GPPSPGYYPS SKISPISFNQ GFKNLWGPQH QRIDQGSLTI WLDTSTGSGF
KSLHSYKSGY FGAAIKLQPG YTAGVITSLY LSNNQDHPGN HDEIDIEFLG TTPDKPYVLQ TNVYIRGSGD GNIIGREMRF
HLWFDPTQDF HNYAVLWKPS ELIFFVDDVP IRRYPRKSEA TYPTRPMYVY GSIWDASSWA TEGGKYKADY RYQPFVGRYK
NFRLQGCTSE SSASCHPPST SSGFGSLSPQ QFRAMQWVQT NYMVYNYCHD PRRDHNLIPE C*