GBrowse Details

Vigan.06G176700.01

Basic Information:
Name: Vigan.06G176700.01
Multiple alignment
Variant Information
Position: Chr06:31147605..31152816 (+ strand)
Length: 5212
Functional Information:
Description: Similar to Uncharacterized protein. [C6TD23, Glycine max]
GO: Biological Process: protein transport (GO:0015031)
InterPro: Snf7 (IPR005024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.61,27.77,27.94,36.40,30.80,31.11,33.80,34.10
Arabidopsis thaliana homolog: AT5G22950.1
Automatic updates:
Name: NM_001253033 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuolar protein sorting-associated protein 24 homolog 1-like (LOC100797244), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254341 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuolar protein sorting-associated protein 24 homolog 1-like (LOC100780989), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:31147605..31147764 (+ strand)
Length: 160
Type: five_prime_UTR
Position: Chr06:31147765..31147876 (+ strand)
Length: 112
Type: CDS
Position: Chr06:31147965..31148041 (+ strand)
Length: 77
Type: CDS
Position: Chr06:31148794..31148896 (+ strand)
Length: 103
Type: CDS
Position: Chr06:31151939..31152060 (+ strand)
Length: 122
Type: CDS
Position: Chr06:31152168..31152359 (+ strand)
Length: 192
Type: CDS
Position: Chr06:31152451..31152531 (+ strand)
Length: 81
Type: CDS
Position: Chr06:31152532..31152816 (+ strand)
Length: 285
Type: three_prime_UTR


>Vigan.06G176700.01
AGAACGATGG TGGGTATTAT TCGTGGAATC GAATTTCAGT AGGATCTAAT CTTCAGAGGT TTTGCCAAAA GAACAAAATT
TGAAGCAATT GTTTTTGTGA GCAAACTCTA ATTCCTTACG ATCTCTTGAA AATCAATTAT CGATTTGGGG ATCAGAGGGA
ATGGAGAAGG TGATGAACAT TCTGAAGCCG AAGCCAAATC CGCAACAACT ATTGAGGGAT TGGCAGCGCA GGCTTCGTCA
GGAGTGTCGC AACATCGAGC GCCAAATTCG CGATATACAG AGAGAAGAAA AAAGTGTGCA GAAGGCGATC AGAGAAGCTG
CAAAGAGGAA TGACATGGGC TCCGCAAAGG CACTTGCCAA GGAACTTGTG AGATCTAAGA AGACTGTTAA CCGTCTCTAT
GAAAATAAAG CACAAATGAA TTCTATATCG ATGCACCTTG GAGAGAGCGT TGCAATTGCT CGTACCGTGG GGCATCTGTC
AAAAAGTGCT GAGGTTATGA AGCTGGTCAA TAATCTCATG AAGGCTCCCG AAATGGCTGT GACAATGCAA GAGTTCAGCA
AAGAAATGAC TAAGGCAGGA GTTATCGAGG AGATAGTAAA TGATGCTGTG GACACAGCAC TAGATTCCGA GGATATAGAA
GATGAGATAG AAGAAGAAGT CGATAAAGTG TTGACTGCAA TAGCTGGTGA GACAGCTGCA CAACTTCCTG AAGCTGTGAG
GAAAGAAAGG GTGAAACAAC CTGGTCAAAG TGTTGGAGCC TCAGAGGAAG AGGCTATAGC AGAGGGTGTT GATGATGAGG
AAGAAATGGA AGAAATTAGG GCCCGACTTG CTAAAGTTAG ATCATAAGCA AGTATTATAA TCTCGCACCC TCTACCTTGT
ACTCTGGTGT GTTATAAGGG AGATTGAGAT GTTGACAGGT TTGTATCTTA TTTGTTGAAA CAGACAATTG ATAATTATAA
TGGCTAATAT AGTATTGTGA AGGGAGGTTC GTATGTAATT ACACGAAGTT CTTGAAAATG TCTCGAGCTG TAGTTATTTT
TTTTCTTCCT GTGACAAGAT TTAAAGTAAC TTCATGCATT ATTTGGCTCC AAGCAAAACT TAGTTAAATA AAATTAGTAA
AATTAATCAG CA

>Vigan.06G176700.01
ATGGAGAAGG TGATGAACAT TCTGAAGCCG AAGCCAAATC CGCAACAACT ATTGAGGGAT TGGCAGCGCA GGCTTCGTCA
GGAGTGTCGC AACATCGAGC GCCAAATTCG CGATATACAG AGAGAAGAAA AAAGTGTGCA GAAGGCGATC AGAGAAGCTG
CAAAGAGGAA TGACATGGGC TCCGCAAAGG CACTTGCCAA GGAACTTGTG AGATCTAAGA AGACTGTTAA CCGTCTCTAT
GAAAATAAAG CACAAATGAA TTCTATATCG ATGCACCTTG GAGAGAGCGT TGCAATTGCT CGTACCGTGG GGCATCTGTC
AAAAAGTGCT GAGGTTATGA AGCTGGTCAA TAATCTCATG AAGGCTCCCG AAATGGCTGT GACAATGCAA GAGTTCAGCA
AAGAAATGAC TAAGGCAGGA GTTATCGAGG AGATAGTAAA TGATGCTGTG GACACAGCAC TAGATTCCGA GGATATAGAA
GATGAGATAG AAGAAGAAGT CGATAAAGTG TTGACTGCAA TAGCTGGTGA GACAGCTGCA CAACTTCCTG AAGCTGTGAG
GAAAGAAAGG GTGAAACAAC CTGGTCAAAG TGTTGGAGCC TCAGAGGAAG AGGCTATAGC AGAGGGTGTT GATGATGAGG
AAGAAATGGA AGAAATTAGG GCCCGACTTG CTAAAGTTAG ATCATAA

>Vigan.06G176700.01
MEKVMNILKP KPNPQQLLRD WQRRLRQECR NIERQIRDIQ REEKSVQKAI REAAKRNDMG SAKALAKELV RSKKTVNRLY
ENKAQMNSIS MHLGESVAIA RTVGHLSKSA EVMKLVNNLM KAPEMAVTMQ EFSKEMTKAG VIEEIVNDAV DTALDSEDIE
DEIEEEVDKV LTAIAGETAA QLPEAVRKER VKQPGQSVGA SEEEAIAEGV DDEEEMEEIR ARLAKVRS*