GBrowse Details

Vigan.06G180000.01

Basic Information:
Name: Vigan.06G180000.01
Multiple alignment
Variant Information
Position: Chr06:31535216..31539979 (- strand)
Length: 4764
Functional Information:
Description: Similar to Uncharacterized protein. [I1LL25, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Biological Process: protein refolding (GO:0042026)
Biological Process: cellular protein metabolic process (GO:0044267)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: ATP binding (GO:0005524)
InterPro: Chaperonin Cpn60 (IPR001844)
Chaperonin Cpn60/TCP-1 (IPR002423)
Chaperonin Cpn60, conserved site (IPR018370)
GroEL-like apical domain (IPR027409)
GroEL-like equatorial domain (IPR027413)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:104.19,184.58,94.76,158.88,77.21,107.56,26.76,72.16
Arabidopsis thaliana homolog: AT1G55490.1, AT2G28000.1, AT3G13470.1, AT5G18820.1, AT5G56500.1
Automatic updates:
Name: NM_001289219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like (LOC100775463), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:31535216..31536797 (- strand)
Length: 1582
Type: three_prime_UTR
Position: Chr06:31536798..31537085 (- strand)
Length: 288
Type: CDS
Position: Chr06:31537448..31537899 (- strand)
Length: 452
Type: CDS
Position: Chr06:31538202..31538508 (- strand)
Length: 307
Type: CDS
Position: Chr06:31538739..31538884 (- strand)
Length: 146
Type: CDS
Position: Chr06:31538977..31539184 (- strand)
Length: 208
Type: CDS
Position: Chr06:31539297..31539418 (- strand)
Length: 122
Type: CDS
Position: Chr06:31539509..31539683 (- strand)
Length: 175
Type: CDS
Position: Chr06:31539807..31539863 (- strand)
Length: 57
Type: CDS
Position: Chr06:31539864..31539979 (- strand)
Length: 116
Type: five_prime_UTR


>Vigan.06G180000.01
GTTCTGGAAT AGGTGGAATT TTCTAGAACC CCAACCCTCT CCATAAAAAC CCAAACCCTA ATCTTCTTAA CTCTGTTTCA
GTGTATTCCC TTATCCATTT CCTTTCACTC CACACCATGG CCTCTGCAAA CGCTCTCTCT TCAGCTTCTA TTCTACGTTC
CCCTAACCGC CAGTCTCTCA CCCGAAGAGT CAACCAGAAC GGAAGAGTGA ATTACCGGCA ACCGAATAGC CGTTTCGCGG
TGAAGGCCTC CGCGAAGGAG ATTGCGTTCG ACCAAAGTTC CCGGGCTGCG ATTCAGGCCG GCATTGACAA GCTAGCCGAC
GCCGTTGGAC TCACTCTTGG GCCGAGAGGG AGAAATGTTG TGTTGGATGA GTTTGGAAGT CCAAAAGTGG TTAACGATGG
TGTTACCATT GCTCGCGCTA TCGAGCTTCC CGATGCCATG GAGAATGCCG GTGCAGCTCT TATTAGAGAG GTTGCTAGTA
AGACCAATGA CTCTGCGGGT GATGGGACAA CCACGGCTTC GGTTCTTGCT CGCGAAATTA TTAAGCTGGG GCTTCTCAGT
GTGACTTCTG GAGCAAATCC CGTGTCTCTT AAAAGAGGAA TTGACAAAAC TGTGCAGGGA TTGGTGGAGG AGTTGGAGAA
GAAAGCAAGG CCTGTCAAAG GTGGAGATGA TATCAAAGCT GTTGCATCTA TTTCTGCTGG GAATGATGAG TTGATTGGGC
AAATGATTGC GGAAGCAATT GATAAGGTTG GACCTGATGG TGTTTTGTCC ATTGAGTCTT CGTCTTCATT TGAAACGACG
GTTGAAGTTG AAGAAGGAAT GGAGATTGAC AGAGGGTATA TCTCACCTCA ATTCGTTACA AACCCTGAGA AGTTGATTGT
TGAATTTGAG AATGCTAGAG TGTTGGTTAC GGATCAGAAG ATTTCAGCAA TAAAAGACAT AATTCCATTG TTGGAGAAAA
CCACTCAATT GAGAGCTCCT TTGCTTATCA TTGCTGAGGA TGTCACCGGT GAGGCTTTGG CCACACTTGT TGTGAATAAG
CTGCGTGGTA TCCTTAACGT TGCTGCCATC AAAGCTCCTG GCTTTGGGGA GCGGCGAAAG GCCCTCCTTC AAGACATTGC
TATATTGACT GGTGCTGAGT TCCAAGCGAG TGATCTGGGA TTGCTTGTTG AAAGCACCTC AGTGGAGCAG CTTGGTTTGG
CTCGGAAAGT GACCATCAGC AAGGATTCTA CTACTATCAT TGCTGATGCG GCAACAAAGG ATGAGTTGCA AGCCAGAATT
GCTCAGTTAA AGAAGGAGCT GTCAGAGACG GACTCAGTTT ATGATACTGA AAAACTGGCT GAGAGGATAG CTAAATTGTC
TGGTGGAGTT GCAGTCATCA AGGTTGGTGC TGCTACAGAA ACTGAACTTG AGGATCGAAA GCTACGAATT GAGGATGCGA
AGAATGCAAC TTTTGCTGCC ATTGAGGAAG GTATTGTCCC TGGTGGAGGT ACTGCATTGG TTCATCTCTC CACTCATGTC
CCAGCAATCA AGAACAGGCT TGAGGATGCA GACGAAAGGC TAGGAGCCGA TATTGTGCAA AAGGCTCTGG TAGCACCTGC
TGCATTGATT GCTCAGAATG CTGGAATAGA AGGTGAAGTT GTTGTGGAGA AGATAAAGAA TGGTGAATGG GAGGTTGGTT
ATAATGCTAT GGCAGACAGG TATGAGAATT TAGTAGATGC AGGAGTTATC GACCCTGCCA AGGTTACAAG GTGTGCGTTG
CAGAATGCTG CTTCAGTTGC TGGAATGGTG TTGACCACGC AGGCCATTGT GGTGGAAAAA GCAAAGCCCA AGGCACCTGT
AGCTGGTGCC CCACAAGGCC TTACCGTTTG ATTTTAGGTC ATTAGGCTAC GGCGAAGAAC AGTTTTGTGC AGTAAATGGA
AAGAGCGTAA GTGTTCCAAA TGTCTGTTCA ATTAAAAAAA ATGTATTTTA TAAACGGTTT TAGATTGGCT TGGGAGAAGA
GGAAAGTTAT TAATTGGATC CTAGTTATGG TATTTTTATG ATTGAAATAA GGTAGTCATT TGATATTTTT ACCGAAGTTT
TAGTTGTGTA AGCATAGGTA ATTTTGGTTC TTATCTTTCG TTTAAAAAAT TATATCATTC GCTTTACCCC AAAACTATGG
TTCTACTGTA ACCTATTAGG GTAGATACCC TATTTACCAC TGCTATTTTT TCTCACGGTT TAATGAAAAA ACGTCGGTAT
TCGAATTTCA GGATTCTTTT CTGCAACAGT AAGGGCAGAA TCTCGTTTTG GGTTGCAAAT ATACTGAACA TTGTTTCTAG
ATAACTTTAT ATCTTCATCG AATGTATTCT AATTAAATAG ATCTATTAGA ATTATTTTCC ATTAAGTGAA TGAATTTTCG
AATCATAAAC CATATCAATT GTGAAAGTAG CTCCAGAGCT TTTGTTCTTT GATTTTGCAG AAAAAAGCCT TCGGCCATCA
AGAGGACGTA TCCTTGACTA GCACATAAGC AACCCAACGT TCTGTTTGTT TTGCGTTCAC ATAAGCTATT AGTTTTGCGG
TAGAGCACAA TTATCTCCGC GCAAGTGCAA TCTGTGAGGA TGTGTGTGGA TGTGAAATGC ATTCTAAATT ATATCAGTTA
TTTCTACCAT TTGATTCTAC ATGGGAGGAT GCAAGGCTTA AAACTGAAAT TTACTTTCAC TGCTGTGAAA TAGTGTTTAA
TTTTCTATTC AAGGACATGG TCAATGATCT TCATTCAGTA TTTTGTCTAA GCCTTTAATA GTCTATGAAA TGGTTTGTTA
TTTCAATATA AGAGAATTAG GTATGTTTTA CACGATTAAC CCGCAGGTTA TTTTACACTT ACATGTACGA GTTACGGAAT
CTAATATTTT TTTTTTGGTG TGTGTGTATG TTTTTCTTTA TAGAACAATG CATAGTATTT CTTATTGGTC GTTTCTGACT
TGTTCCTCCA TTTCTTTTTA CCCGGGCTCT ATGTCCAGCC TGGGCTTCAT CTCTTGAGCT TATATGGTTT ATATGGTTGA
TAGCACTCCT ATTTTACTAA CACGCTCTCT TCTTTATTTT TGGAAAATGT TTCATGAATA TTCAAAACAT TAATCTACAC
CTAGAGAGAA AAATAAATAA AAGAAAAATA TATATAAGTT TGGATATATA ATGTGAGGAA ATAAAAGAGA AAAAACAAAT
ATAATAGGTG TATTTCAAAA ATGTTTTGGG TGTAATTTCT CTCTACGTCA AACATCTCCT TTAATTTCTC TCTCTCTCTC
TCTCGGATCT TCATGAAACG TTTTTCTAAA CCATAATATG TACATCCTTT TCAGGCGTGA TAGTGCACTC TGCAATTGCA
TAATTGGCAA TAGTTTCTTC ATAGAATGGA GGACCATGTC AAGGACTAAC TTATTGCAAA ACAAAAACTA TATTCGTAAC
CATTCTTTTC TTC

>Vigan.06G180000.01
ATGGCCTCTG CAAACGCTCT CTCTTCAGCT TCTATTCTAC GTTCCCCTAA CCGCCAGTCT CTCACCCGAA GAGTCAACCA
GAACGGAAGA GTGAATTACC GGCAACCGAA TAGCCGTTTC GCGGTGAAGG CCTCCGCGAA GGAGATTGCG TTCGACCAAA
GTTCCCGGGC TGCGATTCAG GCCGGCATTG ACAAGCTAGC CGACGCCGTT GGACTCACTC TTGGGCCGAG AGGGAGAAAT
GTTGTGTTGG ATGAGTTTGG AAGTCCAAAA GTGGTTAACG ATGGTGTTAC CATTGCTCGC GCTATCGAGC TTCCCGATGC
CATGGAGAAT GCCGGTGCAG CTCTTATTAG AGAGGTTGCT AGTAAGACCA ATGACTCTGC GGGTGATGGG ACAACCACGG
CTTCGGTTCT TGCTCGCGAA ATTATTAAGC TGGGGCTTCT CAGTGTGACT TCTGGAGCAA ATCCCGTGTC TCTTAAAAGA
GGAATTGACA AAACTGTGCA GGGATTGGTG GAGGAGTTGG AGAAGAAAGC AAGGCCTGTC AAAGGTGGAG ATGATATCAA
AGCTGTTGCA TCTATTTCTG CTGGGAATGA TGAGTTGATT GGGCAAATGA TTGCGGAAGC AATTGATAAG GTTGGACCTG
ATGGTGTTTT GTCCATTGAG TCTTCGTCTT CATTTGAAAC GACGGTTGAA GTTGAAGAAG GAATGGAGAT TGACAGAGGG
TATATCTCAC CTCAATTCGT TACAAACCCT GAGAAGTTGA TTGTTGAATT TGAGAATGCT AGAGTGTTGG TTACGGATCA
GAAGATTTCA GCAATAAAAG ACATAATTCC ATTGTTGGAG AAAACCACTC AATTGAGAGC TCCTTTGCTT ATCATTGCTG
AGGATGTCAC CGGTGAGGCT TTGGCCACAC TTGTTGTGAA TAAGCTGCGT GGTATCCTTA ACGTTGCTGC CATCAAAGCT
CCTGGCTTTG GGGAGCGGCG AAAGGCCCTC CTTCAAGACA TTGCTATATT GACTGGTGCT GAGTTCCAAG CGAGTGATCT
GGGATTGCTT GTTGAAAGCA CCTCAGTGGA GCAGCTTGGT TTGGCTCGGA AAGTGACCAT CAGCAAGGAT TCTACTACTA
TCATTGCTGA TGCGGCAACA AAGGATGAGT TGCAAGCCAG AATTGCTCAG TTAAAGAAGG AGCTGTCAGA GACGGACTCA
GTTTATGATA CTGAAAAACT GGCTGAGAGG ATAGCTAAAT TGTCTGGTGG AGTTGCAGTC ATCAAGGTTG GTGCTGCTAC
AGAAACTGAA CTTGAGGATC GAAAGCTACG AATTGAGGAT GCGAAGAATG CAACTTTTGC TGCCATTGAG GAAGGTATTG
TCCCTGGTGG AGGTACTGCA TTGGTTCATC TCTCCACTCA TGTCCCAGCA ATCAAGAACA GGCTTGAGGA TGCAGACGAA
AGGCTAGGAG CCGATATTGT GCAAAAGGCT CTGGTAGCAC CTGCTGCATT GATTGCTCAG AATGCTGGAA TAGAAGGTGA
AGTTGTTGTG GAGAAGATAA AGAATGGTGA ATGGGAGGTT GGTTATAATG CTATGGCAGA CAGGTATGAG AATTTAGTAG
ATGCAGGAGT TATCGACCCT GCCAAGGTTA CAAGGTGTGC GTTGCAGAAT GCTGCTTCAG TTGCTGGAAT GGTGTTGACC
ACGCAGGCCA TTGTGGTGGA AAAAGCAAAG CCCAAGGCAC CTGTAGCTGG TGCCCCACAA GGCCTTACCG TTTGA

>Vigan.06G180000.01
MASANALSSA SILRSPNRQS LTRRVNQNGR VNYRQPNSRF AVKASAKEIA FDQSSRAAIQ AGIDKLADAV GLTLGPRGRN
VVLDEFGSPK VVNDGVTIAR AIELPDAMEN AGAALIREVA SKTNDSAGDG TTTASVLARE IIKLGLLSVT SGANPVSLKR
GIDKTVQGLV EELEKKARPV KGGDDIKAVA SISAGNDELI GQMIAEAIDK VGPDGVLSIE SSSSFETTVE VEEGMEIDRG
YISPQFVTNP EKLIVEFENA RVLVTDQKIS AIKDIIPLLE KTTQLRAPLL IIAEDVTGEA LATLVVNKLR GILNVAAIKA
PGFGERRKAL LQDIAILTGA EFQASDLGLL VESTSVEQLG LARKVTISKD STTIIADAAT KDELQARIAQ LKKELSETDS
VYDTEKLAER IAKLSGGVAV IKVGAATETE LEDRKLRIED AKNATFAAIE EGIVPGGGTA LVHLSTHVPA IKNRLEDADE
RLGADIVQKA LVAPAALIAQ NAGIEGEVVV EKIKNGEWEV GYNAMADRYE NLVDAGVIDP AKVTRCALQN AASVAGMVLT
TQAIVVEKAK PKAPVAGAPQ GLTV*