VIGGS:GBrowse

Vigan.06G190300.01

Basic Information:

Name:	Vigan.06G190300.01 Multiple alignment Variant Information
Position:	Chr06:32654531..32656635 (- strand)
Length:	2105

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LKC5, Glycine max]
InterPro:	Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:4.49,1.26,5.81,5.09,7.30,3.05,0.90,0.86

Automatic updates:

Name:	NM_001317549 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max LOB domain-containing protein 1-like (LOC100797804), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:32654531..32654939 (- strand)
Length:	409
Type:	three_prime_UTR

Position:	Chr06:32654940..32655302 (- strand)
Length:	363
Type:	CDS

Position:	Chr06:32656142..32656393 (- strand)
Length:	252
Type:	CDS

Position:	Chr06:32656394..32656635 (- strand)
Length:	242
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G190300.01
CAGCCACGTA GGTTAACGAA ATTCAACTGT GACATCACTT TTCCATGCCA TGACATGCTT CCAGCTTCTC CTTTTCTTTA
TAAAAAGGAT TAGGATTCAG CTTCCATTAA CAAACCCCAC CAAGCCACAA GCACACCCTC TTCTTCTTTC TTTCTTTCTT
TGTGTCCCTC AAACACGACA CAACCAGAGA ACAGAAACAC ACAAAGGAAC AGACAAACAA ACAAACAAGG TTAGAAACTG
AGATGGAGAG CAGTGACACA TACACCCCTA CTTCCTCTGC TCCACTTTCT CACTCCCCCA CTTCCTCTTC TTCTTCACCA
CCACCTCCTC CACCTCCCAC TGTTGTCATG AGCCCTTGTG CTGCATGCAA GATTTTGAGG AGAAGATGTG CTGAGAAATG
TGTTCTGGCA CCTTATTTCC CTCCCACTGA ACCTGCAAAG TTTACCATTG CTCACCGTGT GTTTGGTGCC AGCAACATCA
TCAAGTTCCT ACAGGAACTT CCAGAGTCTC AGAGGGCTGA TGCAGTGACC AGCATGGTTT ACGAGGCTAG TGCAAGAATA
AGAGACCCTG TTTATGGCTG TGCAGGAGCA ATCTGCCAGC TCCAGAAGCA GGTGAATGAA CTTCAAGCAC AATTGGCCAA
ATCACAAGCT GAGCTTGTAA CCATGCAACT TCAGCAAGCC AATCTTGTGG CTCTGATCTG CATGGAAATG GCACAGAGTC
CACAGGAATC ACCACAACAA TCAGTCGACA ATTTCATTTC AACTCCTCCT CACACCGGTG GCTATCAAAG CGGCGTGAAC
AACTTCTTTG AGGAGAACAC TAGCCCAAAC TCACTATGGG AGCCCCTTTG GACTTGAAAA ACAAAATCAT ATCAATTTTA
ATTAAATATA AAACATATAG TTTAGACATT CACAAAAAAT GTTCCAATGA TTGTCTCCTA AGGAGAACTT CAAGGAATCA
ATTAGAACTA ATAAAAATCA ATTCAGGGCT AGGATTTATT AGGCTAATTC AATTCCATGC ATGAGGAAAA GAATGTCATT
GCTGCTATAT CTGGTAAGAA GTTCCTGTTT TCAGTCCTAT GATCATGTTA GTCAATCCAA TTTGCTTCGT ATGAAAAATC
CAATGTTAAG AGATTCATTC ACTTGCTGAT CACAGTCTCC AACTTGTTGT AACACCTAAA TTAAACATCA TCATCATACA
AATAGTTGAT GGTGTTTTGC TCCATGTAAT CTTTGAAATT TAAGAGAAAG AAAATTGTTC TTACAA

[show][hide][copy]CDS

>Vigan.06G190300.01
ATGGAGAGCA GTGACACATA CACCCCTACT TCCTCTGCTC CACTTTCTCA CTCCCCCACT TCCTCTTCTT CTTCACCACC
ACCTCCTCCA CCTCCCACTG TTGTCATGAG CCCTTGTGCT GCATGCAAGA TTTTGAGGAG AAGATGTGCT GAGAAATGTG
TTCTGGCACC TTATTTCCCT CCCACTGAAC CTGCAAAGTT TACCATTGCT CACCGTGTGT TTGGTGCCAG CAACATCATC
AAGTTCCTAC AGGAACTTCC AGAGTCTCAG AGGGCTGATG CAGTGACCAG CATGGTTTAC GAGGCTAGTG CAAGAATAAG
AGACCCTGTT TATGGCTGTG CAGGAGCAAT CTGCCAGCTC CAGAAGCAGG TGAATGAACT TCAAGCACAA TTGGCCAAAT
CACAAGCTGA GCTTGTAACC ATGCAACTTC AGCAAGCCAA TCTTGTGGCT CTGATCTGCA TGGAAATGGC ACAGAGTCCA
CAGGAATCAC CACAACAATC AGTCGACAAT TTCATTTCAA CTCCTCCTCA CACCGGTGGC TATCAAAGCG GCGTGAACAA
CTTCTTTGAG GAGAACACTA GCCCAAACTC ACTATGGGAG CCCCTTTGGA CTTGA

[show][hide][copy]PROTEIN

>Vigan.06G190300.01
MESSDTYTPT SSAPLSHSPT SSSSSPPPPP PPTVVMSPCA ACKILRRRCA EKCVLAPYFP PTEPAKFTIA HRVFGASNII
KFLQELPESQ RADAVTSMVY EASARIRDPV YGCAGAICQL QKQVNELQAQ LAKSQAELVT MQLQQANLVA LICMEMAQSP
QESPQQSVDN FISTPPHTGG YQSGVNNFFE ENTSPNSLWE PLWT*