GBrowse Details

Vigan.06G190500.01

Basic Information:
Name: Vigan.06G190500.01
Multiple alignment
Variant Information
Position: Chr06:32667718..32672307 (- strand)
Length: 4590
Functional Information:
Description: Similar to Uncharacterized protein. [C6TJJ5, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.69,5.05,48.17,27.46,14.49,76.33,33.25,68.77
Arabidopsis thaliana homolog: AT3G45600.1
Automatic updates:
Name: NM_001254635 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788977 (LOC100788977), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:32667718..32667919 (- strand)
Length: 202
Type: three_prime_UTR
Position: Chr06:32667920..32668264 (- strand)
Length: 345
Type: CDS
Position: Chr06:32671563..32672075 (- strand)
Length: 513
Type: CDS
Position: Chr06:32672076..32672307 (- strand)
Length: 232
Type: five_prime_UTR


>Vigan.06G190500.01
CTCACGCGCT CGCAAATGTT ATTGTCAAAA TATTATGAGA CTCCATAATT AACGAAAAGA AAAGAAAAAA AGAAAAAACA
CATCTTTCGT TTTATTTCAT GCTTACAACA CAGACTGCAT TTATAAATAC AACTCAAGCT TCCATTACTG TCATAACTCT
ATTTTCCGAG CTTAAGAAAG GAACAGAAGA AGATAAGAAG AAAGTAAGAA AGAAGAAGAA GAAGATTGTA AGATGAGAAC
AAGCAACCAC CTGATCGGTG TGCTAAACTT CCTAACGTTT CTGTTGTCGG TTCCGATCCT AGGTGGTGGG ATATGGCTGA
GCAGCAGAGC GAACAACACG GACTGTCTGA AGTTCCTGCA GTGGCCGTTG ATCATAATCG GAGTGAGCAT CATGGTGGTG
TCGCTGGCGG GTTTCGCCGG CGCGTGTTAC CGGAACACGT TTCTGATGCG GCTGTACCTG GTGGTGATGT TCGTGGTGAT
TGCGGTGCTG ATCGGCTTCA TCATATTCGC GTACGTGGTG ACGGACAAAG GGTCGGGTCG GAGGGTGATG AACCGGGCGT
ATTTGGAGTA CAACTTGGAG GACTATTCAG GGTGGTTGGA GGAGCGCGTG GCGAGTGATA GCTACTGGGG GAAGATAGGT
TCGTGCATTA GGGATTCCAG AGTGTGTGCG AAGATGGGGA GAACCATTAA TGGAGTTCCT GAAACTGCTG AAATGTTCTA
CGTTAGACAC CTCACACCTA TTCAGTCTGG TTGCTGCAAG CCCCCCGCAG AATGTGGTTA TGTGTATCAG AATGAGACTG
TGTGGAACCT AGGATCAGGA TTGATGGGAG CCAATGCAGA TTGCACAAGG TGGAGCAATG ATCAAGAACA ACTTTGCTAT
GCCTGTAATT CCTGCAAGGC TGGTGTGCTG GCAAGTCTGA AGAAGAGTTG GAGGAAGGTC TCAGTGATCA ACATTGTTGT
TATGATCCTC CTTGTCATTG TTTACATAGT TGCTTATGCA GCATATAGGA ACAACAAGAG GATGGATAAT GATGAACCCT
ATGGTGAAGC CAGGATGACA AAGTCACAAC CTAGTGCCTT TCATCTTTAG TGCCATGCCA AACATGTCTT AGGATTTTGA
GCCTTTTTTT TCCTTTGTAA CTAGGATGTT CTAATGGTTT TGTCTCAAAC ATGAATTTGG TTTTCATCTT CCAAGAATGA
GTATTTAATT ATTATATATT TGCTTGGTAA CTTCACATTT TTTAATGTTG GAATTAGTAT GGATGGATTT GTAAGGATAG
AGAAAATATT TT

>Vigan.06G190500.01
ATGAGAACAA GCAACCACCT GATCGGTGTG CTAAACTTCC TAACGTTTCT GTTGTCGGTT CCGATCCTAG GTGGTGGGAT
ATGGCTGAGC AGCAGAGCGA ACAACACGGA CTGTCTGAAG TTCCTGCAGT GGCCGTTGAT CATAATCGGA GTGAGCATCA
TGGTGGTGTC GCTGGCGGGT TTCGCCGGCG CGTGTTACCG GAACACGTTT CTGATGCGGC TGTACCTGGT GGTGATGTTC
GTGGTGATTG CGGTGCTGAT CGGCTTCATC ATATTCGCGT ACGTGGTGAC GGACAAAGGG TCGGGTCGGA GGGTGATGAA
CCGGGCGTAT TTGGAGTACA ACTTGGAGGA CTATTCAGGG TGGTTGGAGG AGCGCGTGGC GAGTGATAGC TACTGGGGGA
AGATAGGTTC GTGCATTAGG GATTCCAGAG TGTGTGCGAA GATGGGGAGA ACCATTAATG GAGTTCCTGA AACTGCTGAA
ATGTTCTACG TTAGACACCT CACACCTATT CAGTCTGGTT GCTGCAAGCC CCCCGCAGAA TGTGGTTATG TGTATCAGAA
TGAGACTGTG TGGAACCTAG GATCAGGATT GATGGGAGCC AATGCAGATT GCACAAGGTG GAGCAATGAT CAAGAACAAC
TTTGCTATGC CTGTAATTCC TGCAAGGCTG GTGTGCTGGC AAGTCTGAAG AAGAGTTGGA GGAAGGTCTC AGTGATCAAC
ATTGTTGTTA TGATCCTCCT TGTCATTGTT TACATAGTTG CTTATGCAGC ATATAGGAAC AACAAGAGGA TGGATAATGA
TGAACCCTAT GGTGAAGCCA GGATGACAAA GTCACAACCT AGTGCCTTTC ATCTTTAG

>Vigan.06G190500.01
MRTSNHLIGV LNFLTFLLSV PILGGGIWLS SRANNTDCLK FLQWPLIIIG VSIMVVSLAG FAGACYRNTF LMRLYLVVMF
VVIAVLIGFI IFAYVVTDKG SGRRVMNRAY LEYNLEDYSG WLEERVASDS YWGKIGSCIR DSRVCAKMGR TINGVPETAE
MFYVRHLTPI QSGCCKPPAE CGYVYQNETV WNLGSGLMGA NADCTRWSND QEQLCYACNS CKAGVLASLK KSWRKVSVIN
IVVMILLVIV YIVAYAAYRN NKRMDNDEPY GEARMTKSQP SAFHL*