VIGGS:GBrowse

Vigan.06G191800.01

Basic Information:

Name:	Vigan.06G191800.01 Multiple alignment Variant Information
Position:	Chr06:32819752..32823617 (- strand)
Length:	3866

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LR10, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: MAP kinase activity (GO:0004707)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
	Mitogen-activated protein (MAP) kinase, conserved site (IPR003527)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:31.28,2.66,4.65,15.18,11.77,2.39,14.76,6.04

Automatic updates:

Name:	AF104247 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max mitogen-activated protein kinase 1 (MAPK1) mRNA, complete cds.
PubMed ID:	17123101 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001250953 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max mitogen-activated protein kinase 1 (MAPK1), mRNA.
PubMed ID:	17123101 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:32819752..32821184 (- strand)
Length:	1433
Type:	three_prime_UTR

Position:	Chr06:32821185..32821553 (- strand)
Length:	369
Type:	CDS

Position:	Chr06:32821662..32821799 (- strand)
Length:	138
Type:	CDS

Position:	Chr06:32822581..32822710 (- strand)
Length:	130
Type:	CDS

Position:	Chr06:32822927..32823087 (- strand)
Length:	161
Type:	CDS

Position:	Chr06:32823088..32823617 (- strand)
Length:	530
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G191800.01
GTGGCTTTGA CGAGCATACA ATACTAATCA CGTAATAATA CAAGAGGAAA GAAAGGTTGA TGGCTGTTGA AATAATTGAA
CAAAACGGTG GCCGTAGATG AGAGGCGGCT GAAATCAGAG CCGTCCGATT AGTCCCAAAC GCGTCGCACG TGTGCGTGTG
TGGTTCGTTC TGTTATTTTT CTTCTCATGG CGCGTTTTCG CCCCGTCTTC CTGGCACCTG CTCCGAAAGA GTGTGAAGAC
TCAACGTGCT TACCAGGCCG AGTTGACCGA GCGAAAGTAG TTACACGTAC GCACGCACGC ACACACTGAC TCGGTGACTC
ACTCGTTCGT TGATACTATT TAAGTTAAAA CCGCTCCACT CGCCTCTTCC ACTCTCCATC TTCATCCCTT TCTTCTTTGA
CGGTTTCTAG AAAGAGAAAG TTTGTTAGAG GGAGAAAGCG CGGTGGTGCG GTTCGCGAGT GAGAAGAGAG AGAAAACGCT
CTTCTCTGAA CGGTTTCTAG AGAGGGAAAG TTTCATTGAG GGAGAAAGTG ATGGCCGGAG GTAATCCGAA TGGCGTAGCT
GATTTTCCGG CGGTTTCGAC GCACGGCGGA CAGTTCATTC AGTATAACAT ATTCGGCAAC CTCTTCGAGG TTACGACGAA
GTACCGTCCT CCAATCATGC CTATTGGACG CGGCGCTTAC GGAATCGTTT GCTCGCTGTT GAATACGGAG ACGAATGAGC
TGGTGGCTGT TAAGAAAATA GCGAACGCTT TCGATAATCA CATGGACGCT AAGCGAACGC TCCGTGAGAT TAAGCTTCTT
AAACATTTGG ATCATGAAAA CGTAATTGGT TTGAGAGATG TTATTCCTCC ACCATTGCGT AGAGAGTTTA ATGATGTCTA
CATAGCGATG GAACTCATGG ATACTGATCT TCATCATATC ATTCGCTCTA ATCAAAGTCT TTCGGAGGAG CACTGCCAAT
ACTTTTTGTA TCAGATTCTT CGTGGGCTAA AGTATATACA TTCTGCAAAC ATAATCCACA GAGATTTAAA ACCGAGCAAC
CTGTTGTTGA ATTCTAATTG CGACTTGAAG ATTATTGACT TTGGTCTTGC CCGACCAACT ATGGAAAGTG ACTTCATGAC
AGAATACGTA GTCACAAGAT GGTATAGGGC TCCCGAATTA TTGTTGAACT CCTCAGATTA CACCTCTGCG ATAGATGTGT
GGTCTGTTGG TTGCATCTTC ATGGAGCTTA TGAATAAAAA ACCTCTCTTT CCAGGCAAAG ACCATGTGCA TCAGATGCGC
CTATTGACAG AGGTGAGATT GAAAAAACAA GAAAAGACAA TGACCTAAAA AATTGCATAA AATGCTTGCC GTAGCCTCTC
TTAAAATTCG AGGATGACAT GTTTCAAATT ATTTAATACC ATGGATAATA TAGTCAGTAG TTCAATTTTA AAAATTAATT
TTATTTCCAT GCTTACGCTT CTTGTCTTAT CCACAGCTTC TTGGCACCCC AACTGATGCT GACCTTGGGT TAGTAAAAAA
TGAAGACGCA AGAAGATATA TTAGACAGCT TCCTCAATAT CCTCGCCAAC CTTTAGCTCA GGTCTTCCCC CATGTTCATC
CCGCAGCCAT TGATCTTGTT GATAAAATGT TGACAATTGA TCCCACCAAA AGAATTACAG GTACCTTTCC CATTCCTGTC
ATATTTTATT TTATTTATAA TTTTGTATCT GGATGAAGCT ACATGTAGGT TCATTTTGAA CATTGATGAT ATATGCAAAC
CTACATATTG AATGAAAATG GGCAATTTTT TTTATATATT TCTGTTTAAA TATTGGCAGT TGAAGAAGCG CTAGCCCATC
CATACCTTGA AAAACTGCAT GATGTAGCTG ATGAACCAAT CTGCATGGAG CCATTCTCTT TTGAGTTTGA GCAACAACCA
TTGGATGAAG AGCAAATAAA AGAGATGATA TACAGGGAAG CATTAGCACT CAATCCTGAG TATGCTTAAA GCAGAAAGAC
TCAATCAAGG ACTTGTAAGT TGTATCTTTA GAAGGAAAAA TAAAAAAAAT CTTCATTTTT TAATCACTAA GTTCGCTCCT
TACAAGCAGG AAAGTATCAA GTTGAATGAA ATTTCAATCT TGTTCCCAGC CAAGCTCCTT AGGTATTTTA TTCAATCAGT
GTGACTAGTT AGGTGCAACT ACGTCTTGGT GAGTGCCCTT TTGTTGTAAA GTGCCATGCA ACGATATTAG GCTCCACAAA
TTTTTTTTAA CCCTGATGGG TTATTTATTA TTTTATTTTC TTTTGGGCTT GGGTTACTCA TCATGTATCC TGCCTAAGTT
ATTTGCATTG TAACTTCTTG TATCTTAGTT TTATCTATTT TCTGCTATAT TATATGTATA GTGGATTTGA ATTCAGTGAG
CAAACCCTTA AGAGTAGTTC CTGTAATGGT TCAGAAAATT GAATGAACGA AACTTGGTCT GACTTTTCTA ATTTTTAAGT
TTAACGTGTG TCTTGAGTAT GATATATATA GATTTACATT AACATGTTTC TGTGACAATG AGTCTCCTTA CAATATTATG
TCTACATTTA TTCCACTTTT TTTATATAAC TACTTGATCT ATAACATCAG GCTAGTAAAA AGATGGGGTT AATTGTTTTC
CAGACATCTA GCCGAGTTTA AGTCAACAAT AAAGGTATGC AAGTAATCAG ATTCAGGATA TGACTTAACC TCTATTCAGA
ACCTCATCTT TTATGGATAA GATGTAAGCT TTTTCATGCT T

[show][hide][copy]CDS

>Vigan.06G191800.01
ATGGCCGGAG GTAATCCGAA TGGCGTAGCT GATTTTCCGG CGGTTTCGAC GCACGGCGGA CAGTTCATTC AGTATAACAT
ATTCGGCAAC CTCTTCGAGG TTACGACGAA GTACCGTCCT CCAATCATGC CTATTGGACG CGGCGCTTAC GGAATCGTTT
GCTCGCTGTT GAATACGGAG ACGAATGAGC TGGTGGCTGT TAAGAAAATA GCGAACGCTT TCGATAATCA CATGGACGCT
AAGCGAACGC TCCGTGAGAT TAAGCTTCTT AAACATTTGG ATCATGAAAA CGTAATTGGT TTGAGAGATG TTATTCCTCC
ACCATTGCGT AGAGAGTTTA ATGATGTCTA CATAGCGATG GAACTCATGG ATACTGATCT TCATCATATC ATTCGCTCTA
ATCAAAGTCT TTCGGAGGAG CACTGCCAAT ACTTTTTGTA TCAGATTCTT CGTGGGCTAA AGTATATACA TTCTGCAAAC
ATAATCCACA GAGATTTAAA ACCGAGCAAC CTGTTGTTGA ATTCTAATTG CGACTTGAAG ATTATTGACT TTGGTCTTGC
CCGACCAACT ATGGAAAGTG ACTTCATGAC AGAATACGTA GTCACAAGAT GGTATAGGGC TCCCGAATTA TTGTTGAACT
CCTCAGATTA CACCTCTGCG ATAGATGTGT GGTCTGTTGG TTGCATCTTC ATGGAGCTTA TGAATAAAAA ACCTCTCTTT
CCAGGCAAAG ACCATGTGCA TCAGATGCGC CTATTGACAG AGGTGAGATT GAAAAAACAA GAAAAGACAA TGACCTAA

[show][hide][copy]PROTEIN

>Vigan.06G191800.01
MAGGNPNGVA DFPAVSTHGG QFIQYNIFGN LFEVTTKYRP PIMPIGRGAY GIVCSLLNTE TNELVAVKKI ANAFDNHMDA
KRTLREIKLL KHLDHENVIG LRDVIPPPLR REFNDVYIAM ELMDTDLHHI IRSNQSLSEE HCQYFLYQIL RGLKYIHSAN
IIHRDLKPSN LLLNSNCDLK IIDFGLARPT MESDFMTEYV VTRWYRAPEL LLNSSDYTSA IDVWSVGCIF MELMNKKPLF
PGKDHVHQMR LLTEVRLKKQ EKTMT*