GBrowse Details

Vigan.06G192300.01

Basic Information:
Name: Vigan.06G192300.01
Multiple alignment
Variant Information
Position: Chr06:32867798..32871653 (- strand)
Length: 3856
Functional Information:
Description: Similar to Uncharacterized protein. [I1LR16, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
InterPro: AP2/ERF domain (IPR001471)
DNA-binding domain (IPR016177)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.76,73.82,3.92,18.15,11.47,3.71,17.94,28.27
Arabidopsis thaliana homolog: AT2G28550.3
Automatic updates:
Name: KT031086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:32867798..32867845 (- strand)
Length: 48
Type: three_prime_UTR
Position: Chr06:32867846..32868118 (- strand)
Length: 273
Type: CDS
Position: Chr06:32868687..32868800 (- strand)
Length: 114
Type: CDS
Position: Chr06:32869186..32869310 (- strand)
Length: 125
Type: CDS
Position: Chr06:32869418..32869521 (- strand)
Length: 104
Type: CDS
Position: Chr06:32869635..32869679 (- strand)
Length: 45
Type: CDS
Position: Chr06:32869913..32870058 (- strand)
Length: 146
Type: CDS
Position: Chr06:32870143..32870230 (- strand)
Length: 88
Type: CDS
Position: Chr06:32870354..32870384 (- strand)
Length: 31
Type: CDS
Position: Chr06:32870467..32870492 (- strand)
Length: 26
Type: CDS
Position: Chr06:32870673..32871169 (- strand)
Length: 497
Type: CDS
Position: Chr06:32871170..32871653 (- strand)
Length: 484
Type: five_prime_UTR


>Vigan.06G192300.01
AAGAAAGTGT TTCTTCGCAC TTCTCTCTCT TCCATGGAAT CCAATAGTCG GCGACGCTTT CACTTTCTCC GGCGACAATG
AACTCATCGC CGGCGAAGTG GGTTCGCGTT GCTCTCTTCT CACTCGTTCC TTCAGTTCCT TCCTCTCACT CCTCCTTTTC
CGGTCGTCGG AAAATTTATC CGCCGTCCTC ACAAAGATTG AACGAATCGG AAAACTAGAA GCGATTCCGT TTTCTTCTTG
ACTTTTCTTT TTACCTCTCT CTCTCATTCT CGATCGCTAG CTCGCTTACA TTCTGTTGTT TTCGATCGGA TCCATTTCTT
TGCCGGAAAC ACCATCGCCG GCGATATGGA AACGTAGTTC AATAAGCCTC TGCTGACGTT AGAAAACCTT AGGAATTATA
AAAGAGAAAA GCGAAATTTA ATAGTTAGTT TGGTTGTTTA GTTAGTTAAC GTTTGGAACG GTGTAACTAA ATATAAACGC
GACGATGTTA GATCTTAATC TCAATGCTGA GTGGACCGAT TCGGCTCGTG ACGGCGACTC GCCGGTTCCG TTAGAGGAGT
TTCCTGAAGG TTCGCGGAAC CAAATGGCGG AATCAGGGAC TTCGAATTCC TCTGTGGTGA ATGCGGACGG GTCCAGTAAC
GGCTGCTGCG ACGAGGACTC GTGCTCCACG CGCGCTGATG ACGTGTACAC CTTCAATTTC GATATCCTTA AAGTGGAAGG
CGCGAGCGAC GTCGTAACGA AGGAGTTGTT TCCGGTGAGT GGAGGAGTGG CAACGTCGTC GTTTTCGGCG AGAAAAAGTT
TCGTGGATCT CGCGTTCGAT CGTGAGGGAG GAAACAGTGA CATAAAGATG CTTCAGCCGC AGCCTCAGAC TCAGACTCAG
CAACCGGCGA AGAAGAGTAG GAGAGGACCA AGGTCTCGAA GCTCACAGTA CAGAGGGGTT ACCTTTTATA GAAGAACGGG
AAGATGGGAA TCGCATATCT GGGATTGCGG GAAACAAGTC TATTTGGGAG GATTTGACAC GGCTCATGCT GCTGCTAGAG
CCTATGATCG AGCTGCTATT AAGTTCAGGG GAGTTGATGC TGACATCAAT TTCAATCTGA GTGATTATGA GGATGATCTT
AGACAGTTGA AGAATTTGTC CAAGGAGGAA TTCGTACATA TACTGCGCCG CCAAAGTACT GGTTTCTCAA GAGGAAGTTC
TAAATACCGA GGAGTTACTC TCCACAAGTG TGGCCGGTGG GAAGCTCGAA TGGGACAATT CCTTGGCAAA AAGTATATAT
ATCTTGGATT ATTCGACAGC GAAGTAGAAG CTGCAAGGGC TTATGACAAG GCAGCTATCA AATGCAACGG AAGGGAAGCA
GTGACCAACT TTGAGCCAAG TACATACGAA GGAGAGATGA AATCTGCAGC CACTAATGAA GTTAACAATC ATAATCTTGA
TCTCAATTTG GGCATAGCAA CCCCAGGAAC TGGGTCCAAA GAAAATTGGC AGCGACTTCA GTTCCCCTCT GTCCATTACA
ACACGCATGG TGGAATAAGT TCAATGATGG AAACAAATGT TGATTCAGGA GTTGGTAATC CATCTTTGAA AAGACTGGTT
GTGAATGAAG ACTGTCCTTC TGTATGGAAT GGAATGTGTC CTAGTTTCTT TCCCAATGAG CAGGAAAAAA CAGAGAGAAT
GAACACGGAG CATTCGAAAG GACTGCCCAA TTGGGCGTGG CAAACGCATG CCCAGGTCAA TGCTACCCCA GTACCAACGT
TCTCTGCTGC AGCAGCATCA TCAGGATTCT CAATTTCAGC TACCTTTCCT CCCACTGCCA CCTTTCCAAC AAGATCTACG
AACTCCAATC CCCAGAGTCT CTGTTTTACT TCATCCAGCA TGCATTCGTC TGAATATTAT TACCAGGTTA AGCCCCGGCA
GGCACCACTG TAGCCGATCT TGTACTACTC GTTAAAGGCA AACCACAAAA AGTTTTTGCG C

>Vigan.06G192300.01
ATGTTAGATC TTAATCTCAA TGCTGAGTGG ACCGATTCGG CTCGTGACGG CGACTCGCCG GTTCCGTTAG AGGAGTTTCC
TGAAGGTTCG CGGAACCAAA TGGCGGAATC AGGGACTTCG AATTCCTCTG TGGTGAATGC GGACGGGTCC AGTAACGGCT
GCTGCGACGA GGACTCGTGC TCCACGCGCG CTGATGACGT GTACACCTTC AATTTCGATA TCCTTAAAGT GGAAGGCGCG
AGCGACGTCG TAACGAAGGA GTTGTTTCCG GTGAGTGGAG GAGTGGCAAC GTCGTCGTTT TCGGCGAGAA AAAGTTTCGT
GGATCTCGCG TTCGATCGTG AGGGAGGAAA CAGTGACATA AAGATGCTTC AGCCGCAGCC TCAGACTCAG ACTCAGCAAC
CGGCGAAGAA GAGTAGGAGA GGACCAAGGT CTCGAAGCTC ACAGTACAGA GGGGTTACCT TTTATAGAAG AACGGGAAGA
TGGGAATCGC ATATCTGGGA TTGCGGGAAA CAAGTCTATT TGGGAGGATT TGACACGGCT CATGCTGCTG CTAGAGCCTA
TGATCGAGCT GCTATTAAGT TCAGGGGAGT TGATGCTGAC ATCAATTTCA ATCTGAGTGA TTATGAGGAT GATCTTAGAC
AGTTGAAGAA TTTGTCCAAG GAGGAATTCG TACATATACT GCGCCGCCAA AGTACTGGTT TCTCAAGAGG AAGTTCTAAA
TACCGAGGAG TTACTCTCCA CAAGTGTGGC CGGTGGGAAG CTCGAATGGG ACAATTCCTT GGCAAAAAGT ATATATATCT
TGGATTATTC GACAGCGAAG TAGAAGCTGC AAGGGCTTAT GACAAGGCAG CTATCAAATG CAACGGAAGG GAAGCAGTGA
CCAACTTTGA GCCAAGTACA TACGAAGGAG AGATGAAATC TGCAGCCACT AATGAAGTTA ACAATCATAA TCTTGATCTC
AATTTGGGCA TAGCAACCCC AGGAACTGGG TCCAAAGAAA ATTGGCAGCG ACTTCAGTTC CCCTCTGTCC ATTACAACAC
GCATGGTGGA ATAAGTTCAA TGATGGAAAC AAATGTTGAT TCAGGAGTTG GTAATCCATC TTTGAAAAGA CTGGTTGTGA
ATGAAGACTG TCCTTCTGTA TGGAATGGAA TGTGTCCTAG TTTCTTTCCC AATGAGCAGG AAAAAACAGA GAGAATGAAC
ACGGAGCATT CGAAAGGACT GCCCAATTGG GCGTGGCAAA CGCATGCCCA GGTCAATGCT ACCCCAGTAC CAACGTTCTC
TGCTGCAGCA GCATCATCAG GATTCTCAAT TTCAGCTACC TTTCCTCCCA CTGCCACCTT TCCAACAAGA TCTACGAACT
CCAATCCCCA GAGTCTCTGT TTTACTTCAT CCAGCATGCA TTCGTCTGAA TATTATTACC AGGTTAAGCC CCGGCAGGCA
CCACTGTAG

>Vigan.06G192300.01
MLDLNLNAEW TDSARDGDSP VPLEEFPEGS RNQMAESGTS NSSVVNADGS SNGCCDEDSC STRADDVYTF NFDILKVEGA
SDVVTKELFP VSGGVATSSF SARKSFVDLA FDREGGNSDI KMLQPQPQTQ TQQPAKKSRR GPRSRSSQYR GVTFYRRTGR
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNLSDYED DLRQLKNLSK EEFVHILRRQ STGFSRGSSK
YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEPST YEGEMKSAAT NEVNNHNLDL
NLGIATPGTG SKENWQRLQF PSVHYNTHGG ISSMMETNVD SGVGNPSLKR LVVNEDCPSV WNGMCPSFFP NEQEKTERMN
TEHSKGLPNW AWQTHAQVNA TPVPTFSAAA ASSGFSISAT FPPTATFPTR STNSNPQSLC FTSSSMHSSE YYYQVKPRQA
PL*