GBrowse Details

Vigan.06G197300.01

Basic Information:
Name: Vigan.06G197300.01
Multiple alignment
Variant Information
Position: Chr06:33407829..33411719 (- strand)
Length: 3891
Functional Information:
Description: Similar to Protein-tyrosine phosphatase-like member B. [G7JRH2, Medicago truncatula]
InterPro: Protein-tyrosine phosphatase-like, PTPLA (IPR007482)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.99,8.36,16.41,2.67,9.16,1.03,13.70
Arabidopsis thaliana homolog: AT5G59770.1
Automatic updates:
Name: NM_001251695 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527607 (LOC100527607), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33407829..33408109 (- strand)
Length: 281
Type: three_prime_UTR
Position: Chr06:33408110..33408214 (- strand)
Length: 105
Type: CDS
Position: Chr06:33408926..33409023 (- strand)
Length: 98
Type: CDS
Position: Chr06:33409183..33409232 (- strand)
Length: 50
Type: CDS
Position: Chr06:33409347..33409414 (- strand)
Length: 68
Type: CDS
Position: Chr06:33409917..33409970 (- strand)
Length: 54
Type: CDS
Position: Chr06:33410424..33410512 (- strand)
Length: 89
Type: CDS
Position: Chr06:33410612..33410659 (- strand)
Length: 48
Type: CDS
Position: Chr06:33411345..33411430 (- strand)
Length: 86
Type: CDS
Position: Chr06:33411503..33411561 (- strand)
Length: 59
Type: CDS
Position: Chr06:33411562..33411719 (- strand)
Length: 158
Type: five_prime_UTR


>Vigan.06G197300.01
AAAGAATAAA TATATAATAT ATGAGAAAAA TATATAAAAA TGATTCAAAA TAGAAGTGAA CCCTTGCGAT TGGTAGTTGC
TGAGTGTTTA TTATAGACAT CTCCGGCGAA CTAGGGAAGG AGAAGAGGGA AACGAAACGA GAAATCGAGA GACGGAGAAT
GTCTCGTATC TCCACATTCT ATCTTCTCGC TTACAACTCC TTTCAGACCG TTGGATGGAC GCTTTCGTTG ATTAAGATTT
TGTACAATCT TATCGCCACT GCCTCCATCA ACGGAACCTA TGCTTCCGCC GGCAATTTGA TTTGTTTTCT GCAATGTGCT
GCATTCTTGG AAGTTATACA CGGAGCCATT GGTATTGTGC CCAGCGGAGT TTTGCTTCCT CTTATGCAAT GGGGAGGAAG
GACCCACTTT GTGCTTGCCA TTGTTCGGAA ACTTGATGAG CTCCAGGAAC TTCCTTCAGT TTTTATCACT TTTCTTGCAT
GGAGCATGGG TGAGGTCGTT AGGTATTCAC ATTATGCTTT CAGTTGTTCG GGAAATTGTC CTTCTTGGAT GACCTATCTC
AGGTACACCA CGTTTATTCT GCTGTATCCT TTGGGAGTGG GTCCTGGTGA AATATGGACA ATGTACCAGG CGCTTCCAAT
TATAAAGAAG AAGAATCTCT ATGCAGATTC CTTTTCAGGC CTCCCATTTA GTTATTATGA TTTCCTTAAG GTTGTACTTG
TAGCTTATCC ATTCCTTTGG TTCAAACTTT ACCTGCACAT GTTCAGGCAA CGACGTGCGA AACTTTATAA ACGCCATGAC
AAGAAAACGG CTTGAGGAGC TTTACAAAAC TTTATAGACA CCATTCTTGG TTAGTCAAGT TGGAGTGATG ATTAAACTTC
TGATACAATA TGTATTTTGT TAAAAAAATG AATGACTTTC TTTGTGGCAC TGAAGACACT CATTCTGAAA TTTATTTATT
TCCTTTCCAA TTTTTTTGTT GATTGGATTC TAGTGTCAAA TAATGGATTT GTTCCTTGTA ATATGGTAAG ATTTGGGAGA
GAAAACGATT TGCAATGTTT TTGCCTTCAG TATTGTGTAT ACAGATTTCT TCCTGG

>Vigan.06G197300.01
ATGTCTCGTA TCTCCACATT CTATCTTCTC GCTTACAACT CCTTTCAGAC CGTTGGATGG ACGCTTTCGT TGATTAAGAT
TTTGTACAAT CTTATCGCCA CTGCCTCCAT CAACGGAACC TATGCTTCCG CCGGCAATTT GATTTGTTTT CTGCAATGTG
CTGCATTCTT GGAAGTTATA CACGGAGCCA TTGGTATTGT GCCCAGCGGA GTTTTGCTTC CTCTTATGCA ATGGGGAGGA
AGGACCCACT TTGTGCTTGC CATTGTTCGG AAACTTGATG AGCTCCAGGA ACTTCCTTCA GTTTTTATCA CTTTTCTTGC
ATGGAGCATG GGTGAGGTCG TTAGGTATTC ACATTATGCT TTCAGTTGTT CGGGAAATTG TCCTTCTTGG ATGACCTATC
TCAGGTACAC CACGTTTATT CTGCTGTATC CTTTGGGAGT GGGTCCTGGT GAAATATGGA CAATGTACCA GGCGCTTCCA
ATTATAAAGA AGAAGAATCT CTATGCAGAT TCCTTTTCAG GCCTCCCATT TAGTTATTAT GATTTCCTTA AGGTTGTACT
TGTAGCTTAT CCATTCCTTT GGTTCAAACT TTACCTGCAC ATGTTCAGGC AACGACGTGC GAAACTTTAT AAACGCCATG
ACAAGAAAAC GGCTTGA

>Vigan.06G197300.01
MSRISTFYLL AYNSFQTVGW TLSLIKILYN LIATASINGT YASAGNLICF LQCAAFLEVI HGAIGIVPSG VLLPLMQWGG
RTHFVLAIVR KLDELQELPS VFITFLAWSM GEVVRYSHYA FSCSGNCPSW MTYLRYTTFI LLYPLGVGPG EIWTMYQALP
IIKKKNLYAD SFSGLPFSYY DFLKVVLVAY PFLWFKLYLH MFRQRRAKLY KRHDKKTA*