GBrowse Details

Vigan.06G198700.01

Basic Information:
Name: Vigan.06G198700.01
Multiple alignment
Variant Information
Position: Chr06:33522353..33523300 (+ strand)
Length: 948
Functional Information:
Description: Similar to Dessication-induced 1VOC superfamily protein. [XP_007016472.1, Theobroma cacao]
InterPro: Glyoxalase-like domain (IPR025870)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.04,0.72,0.00,5.87,0.00,0.11,0.17
Arabidopsis thaliana homolog: AT1G07645.1
Automatic updates:
Name: NM_001251319 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527071 (LOC100527071), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33522353..33522559 (+ strand)
Length: 207
Type: five_prime_UTR
Position: Chr06:33522560..33522684 (+ strand)
Length: 125
Type: CDS
Position: Chr06:33522766..33522928 (+ strand)
Length: 163
Type: CDS
Position: Chr06:33523035..33523166 (+ strand)
Length: 132
Type: CDS
Position: Chr06:33523167..33523300 (+ strand)
Length: 134
Type: three_prime_UTR


>Vigan.06G198700.01
CCATAATATT GGATATACAA AATAATCCAT TTATACTGGT TTATACATTA CTCACCAAAA TTTCTGATCT GAAAATTTGA
TGTTCTTCGA TAAATTTTAG TGTAACGTGA CAACGTGCAT GAAAATTGAC TCACGAGATT GGAAGAATAA AGCTACGAGT
GCGAGGAGGA AGCTGAACCG AGATCGATCA CATATCAAAC AGTAACAATG GCGACGAATC AGAAACCGGT TTTTGGGTAC
GTGGTGATCT ACGTGAAAGA CGTAGCTGCC TCGGTGGCTT TCTTTGCCAA AGCCTTCGGC TATGAAGTTC GTCGCTTAGA
CGAGTCTCAC AGATGGGGAG AGTTGGAAAC GGGGAGCACA ACTATCGCTT TCACTCCGAT TCACCAGCAC GAGACCGATA
ATCTGACCGG TGCGGTTCAC AGCTCTGGAT CTGGTGGAGA AAGACCACCC ATGGAGGTTT GTTTTGTTTA CTCCGACGTA
GATGCTGCTT TTAAGCGTGC GGTGGAGAAT GGAGCGGTGG CTGTAAGGGA GCCGGAGGGA AAGGAGTGGG GCCAGAAGGT
TGGGTACGTC AGAGATATTG ACGGCAACGT TGTTAGAATG GGAAGCCATG TCAAACCACC CAAATGATTC TTTCTCTATG
TTTAGGTGGA CTTCGAGAAA CTTGGGAAAT ATTATGCTTT TTACGTTAGT TTTGTATGCG TATTTCAGTC ACTGACGAAT
AAACTTGCTG TCAACTAAAC CATGAAATAA ATGGATTTTT C

>Vigan.06G198700.01
ATGGCGACGA ATCAGAAACC GGTTTTTGGG TACGTGGTGA TCTACGTGAA AGACGTAGCT GCCTCGGTGG CTTTCTTTGC
CAAAGCCTTC GGCTATGAAG TTCGTCGCTT AGACGAGTCT CACAGATGGG GAGAGTTGGA AACGGGGAGC ACAACTATCG
CTTTCACTCC GATTCACCAG CACGAGACCG ATAATCTGAC CGGTGCGGTT CACAGCTCTG GATCTGGTGG AGAAAGACCA
CCCATGGAGG TTTGTTTTGT TTACTCCGAC GTAGATGCTG CTTTTAAGCG TGCGGTGGAG AATGGAGCGG TGGCTGTAAG
GGAGCCGGAG GGAAAGGAGT GGGGCCAGAA GGTTGGGTAC GTCAGAGATA TTGACGGCAA CGTTGTTAGA ATGGGAAGCC
ATGTCAAACC ACCCAAATGA 

>Vigan.06G198700.01
MATNQKPVFG YVVIYVKDVA ASVAFFAKAF GYEVRRLDES HRWGELETGS TTIAFTPIHQ HETDNLTGAV HSSGSGGERP
PMEVCFVYSD VDAAFKRAVE NGAVAVREPE GKEWGQKVGY VRDIDGNVVR MGSHVKPPK*