GBrowse Details

Vigan.06G198800.01

Basic Information:
Name: Vigan.06G198800.01
Multiple alignment
Variant Information
Position: Chr06:33524198..33529174 (- strand)
Length: 4977
Functional Information:
Description: Similar to ubiquitin-conjugating enzyme E2 7-like. [XP_004171444.1, Cucumis sativus]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:199.42,100.38,55.43,52.34,69.41,97.30,59.36,60.01
Arabidopsis thaliana homolog: AT5G59300.1
Automatic updates:
Name: NM_001250126 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305813 (LOC100305813), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250728 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499900 (LOC100499900), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33524198..33524442 (- strand)
Length: 245
Type: three_prime_UTR
Position: Chr06:33524443..33524520 (- strand)
Length: 78
Type: CDS
Position: Chr06:33525947..33526024 (- strand)
Length: 78
Type: CDS
Position: Chr06:33528018..33528118 (- strand)
Length: 101
Type: CDS
Position: Chr06:33528198..33528295 (- strand)
Length: 98
Type: CDS
Position: Chr06:33528763..33528865 (- strand)
Length: 103
Type: CDS
Position: Chr06:33528979..33529021 (- strand)
Length: 43
Type: CDS
Position: Chr06:33529022..33529174 (- strand)
Length: 153
Type: five_prime_UTR


>Vigan.06G198800.01
CTCAGTTCTA ATAATCGCAG GCAGTGCAAT CCTGGAACGA CCTTAACCAC ATTCATTCAT ATTCATTCAT AGTTATAAAT
AATTTCAAAT CAATCAGAAG GTGTCGGTTT TGAAAAGATT AAACAATCTT TTTCTCTTCT TCCTTCTCCT TCCATGGCAT
CTCAGGCTAG CCTTCTCCTT CAAAAGCAGC TCAAAGATCT TTGCAAAAAC CCCGTCGACG GCTTCTCCGC CGGTTTGGTC
GACGAAAGCA ACATTTTTGA ATGGAGTGTC ACCATAATTG GACCACCTGA TACTCTATAC GAGGGAGGCT TTTTTAATGC
TATTATGAGT TTTCCATCCA ATTACCCAAA TAGTCCACCG TCAGTGAAGT TCACCTCAGA GATATGGCAT CCCAATGTAT
ATCCTGATGG CCGGGTTTGC ATATCGATTC TTCATCCTCC TGGTGAGGAT CCAAATGGTT ATGAGCTTGC AAGTGAACGA
TGGACACCTG TTCATACAGT AGAGAGTATA GTCTTGAGTA TCATATCAAT GCTTTCCAGC CCTAATGATG AATCTCCTGC
AAATGTTGAA GCCGCAAAGG AGTGGAGAGA TAGGAGAGAT GATTTCAAGA AAAAGGTGAG CCGATGTGTA AGGAAGTCAC
AAGAAATGCT GTGATTTGTG GGCGACCCCT CATACTGCTT TTTGTGAACT GGAGGACATA TAATGTGTAA TGGATTGGTT
CACCTGTTAC TGTTGCTGCG TATAAAAATG GCATTGGAAC TTGTCCACAT TCCTCCTTTC TTCAGTCCCC ATGTCTGTGC
ATGGCCATTT GTCCTAACTT GGAAAACAAA CTGTATTCTA AGTGCTTTGG CCGGTCTTTT GACTTTATTG GAAATTTACT
TTGTTCATTT GCAGAAGCT

>Vigan.06G198800.01
ATGGCATCTC AGGCTAGCCT TCTCCTTCAA AAGCAGCTCA AAGATCTTTG CAAAAACCCC GTCGACGGCT TCTCCGCCGG
TTTGGTCGAC GAAAGCAACA TTTTTGAATG GAGTGTCACC ATAATTGGAC CACCTGATAC TCTATACGAG GGAGGCTTTT
TTAATGCTAT TATGAGTTTT CCATCCAATT ACCCAAATAG TCCACCGTCA GTGAAGTTCA CCTCAGAGAT ATGGCATCCC
AATGTATATC CTGATGGCCG GGTTTGCATA TCGATTCTTC ATCCTCCTGG TGAGGATCCA AATGGTTATG AGCTTGCAAG
TGAACGATGG ACACCTGTTC ATACAGTAGA GAGTATAGTC TTGAGTATCA TATCAATGCT TTCCAGCCCT AATGATGAAT
CTCCTGCAAA TGTTGAAGCC GCAAAGGAGT GGAGAGATAG GAGAGATGAT TTCAAGAAAA AGGTGAGCCG ATGTGTAAGG
AAGTCACAAG AAATGCTGTG A

>Vigan.06G198800.01
MASQASLLLQ KQLKDLCKNP VDGFSAGLVD ESNIFEWSVT IIGPPDTLYE GGFFNAIMSF PSNYPNSPPS VKFTSEIWHP
NVYPDGRVCI SILHPPGEDP NGYELASERW TPVHTVESIV LSIISMLSSP NDESPANVEA AKEWRDRRDD FKKKVSRCVR
KSQEML*