VIGGS:GBrowse

Vigan.06G200500.01

Basic Information:

Name:	Vigan.06G200500.01 Multiple alignment Variant Information
Position:	Chr06:33672765..33675599 (- strand)
Length:	2835

Functional Information:

Description:	Similar to Uncharacterized protein. [C6ZRV6, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:8.37,9.02,6.28,7.00,16.55,10.32,16.01,8.98
Arabidopsis thaliana homolog:	AT2G28940.2

Automatic updates:

Name:	NM_001248281 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein kinase (LOC100305425), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:33672765..33673077 (- strand)
Length:	313
Type:	three_prime_UTR

Position:	Chr06:33673078..33673650 (- strand)
Length:	573
Type:	CDS

Position:	Chr06:33673911..33674033 (- strand)
Length:	123
Type:	CDS

Position:	Chr06:33674824..33675447 (- strand)
Length:	624
Type:	CDS

Position:	Chr06:33675448..33675599 (- strand)
Length:	152
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G200500.01
CATAGAGAGA GAGAAAAAAA AACATTTTAT TATTATTGTT CGTTTTCTTC GTCTTTGTCT TCTTGATTCT GAGTCTGAAA
ACAATGAAAC GTTGAAAGGG AGGAGAGTGC GAAATTTGGA ATGTTTTTGG GTTTGTTCAT TGATTTCCGC AAATGAAGTG
CTTCTACTTC TCCAACGCAG AGGACGAAGA TTGCGTGGCA GCGGCACCGA GTTCGCGCGG TTCCACTTCG CGTGTGTCGT
GGGCGCGTTC GCTCAGTCTC ATGGACACGC GCAGCCGCTC CAACTTCGAC TCCGACTCCA CGGAATTCTC CGATACGGTG
GACTTCCATC ACTTCCTGGT GCAGCGCCGC GCCAACGACC TCCGCATCTT CCCATTCTCA GCGCTGAAGT TTGCCACGCG
CGGGTTCAAC CGCGCCCTCC TAGTTGGCGA GGGGGGGTTT GGGTCCGTGT ACCGCGGCGT GGTGGAGGAA AAGGAGGTGG
CGATCAAGCA GCTGAACCGC AACGGGCAGC AGGGGCACAA GGAGTGGATC AACGAGGTGA ATTTGTTGGG AGTGGTGAAG
CATCCTAATC TGGTGCGGTT GGTAGGGTAC TGCGCTGAGG ACGATGAAAG AGGGATCCAG AGGCTTCTGG TTTATGAGTT
TATGCCGAAT AAGAGCTTGG AGGAGCATCT CTTGGCACGA GTCCCTTCCA CGGTTCTGCC TTGGGGGACC AGGTTGAGGA
TTGCGCAAGA TGCGGCTCGC GGTTTGGCTT ATCTTCACGA AGAAATGGAT TTTCAGCTAA TATTTCGGGA TTTTAAGACG
TCCAACATCC TGCTGGATGA AAACTTCAAT GCAAAGCTTT CTGATTTTGG ACTGGCTAGG CAAGGACCTT CAGAAGGGTC
CGGCTATGTT TCAACAGCAG TTGTTGGCAC CATAGGTTAT GCTGCACCAG AGTATGTTCA GACTGGTAAG CTAACTGCTA
AGAGTGATGT GTGGAGCTTT GGTGTAGTTC TTTACGAGCT TATCACTGGG AGGAGAGCTG TAGAGAGAAA CCTACCTAAA
AATGAACAGA AGCTTTTAGA GTGGGTTAGA TCTTATGTTT CTGATCCTAG GAAGTTCCAT CATATTGTAG ACCCTCGACT
TAAGGGGCAA TACTGCATCA AATCAGCCCA TAAACTTGCA ATCCTGGCAA ACAAATGCCT CACAAAACAG CCGAAGTCTC
GCCCAAAAAT GAGTGAGGTG GTTGAGTCTC TTGGAATCAT TATTATTGAG ACAGATACTC GGGATGAAGG GTTTCCCCAA
GCTGCTGTAA CCGCTAGAGA AGAAAAAGAA GAGAAGGTAT CTGTAGAGGA AACTGAACCT GAACCAGCGA AACAAGGGAA
CAATTACCTG AAGAAGGTTT TTGAATTCAA AGACATGGTC AGCTTAAGAA ACAAGTCTAT TGGAAGGTTG GATTGGAAAA
GTTGGGCGCC TGGGCTAGTA AGAAGCTGGT GACTAAGTGA CCTTACAGTC AGTCACCTGC TAATAGCAAA TTCGCAATGT
TTGTTGATCA CATAGTTTTC AGTCAGTGAA ATCGACATTG TCAGGCATAC AGTTAACATG CTGGTATATA CCCAATTTTG
TATCAATTAA TAATGTTATG TACAGGTTAA CTTTGAGGAA AGCTATGATT TATTAATGAT TTTGCCTTCT CAAACTAACA
ATGAATTAAG TCATGCAAAT CAATATTTGG GCAATAACTG GAATTAACTG TTTCATCCGT ACTCCTTTGA GCCTTGCTTG
CATTTATCAT TTTTTTTTGA AAAAA

[show][hide][copy]CDS

>Vigan.06G200500.01
ATGAAGTGCT TCTACTTCTC CAACGCAGAG GACGAAGATT GCGTGGCAGC GGCACCGAGT TCGCGCGGTT CCACTTCGCG
TGTGTCGTGG GCGCGTTCGC TCAGTCTCAT GGACACGCGC AGCCGCTCCA ACTTCGACTC CGACTCCACG GAATTCTCCG
ATACGGTGGA CTTCCATCAC TTCCTGGTGC AGCGCCGCGC CAACGACCTC CGCATCTTCC CATTCTCAGC GCTGAAGTTT
GCCACGCGCG GGTTCAACCG CGCCCTCCTA GTTGGCGAGG GGGGGTTTGG GTCCGTGTAC CGCGGCGTGG TGGAGGAAAA
GGAGGTGGCG ATCAAGCAGC TGAACCGCAA CGGGCAGCAG GGGCACAAGG AGTGGATCAA CGAGGTGAAT TTGTTGGGAG
TGGTGAAGCA TCCTAATCTG GTGCGGTTGG TAGGGTACTG CGCTGAGGAC GATGAAAGAG GGATCCAGAG GCTTCTGGTT
TATGAGTTTA TGCCGAATAA GAGCTTGGAG GAGCATCTCT TGGCACGAGT CCCTTCCACG GTTCTGCCTT GGGGGACCAG
GTTGAGGATT GCGCAAGATG CGGCTCGCGG TTTGGCTTAT CTTCACGAAG AAATGGATTT TCAGCTAATA TTTCGGGATT
TTAAGACGTC CAACATCCTG CTGGATGAAA ACTTCAATGC AAAGCTTTCT GATTTTGGAC TGGCTAGGCA AGGACCTTCA
GAAGGGTCCG GCTATGTTTC AACAGCAGTT GTTGGCACCA TAGGTTATGC TGCACCAGAG TATGTTCAGA CTGGTAAGCT
AACTGCTAAG AGTGATGTGT GGAGCTTTGG TGTAGTTCTT TACGAGCTTA TCACTGGGAG GAGAGCTGTA GAGAGAAACC
TACCTAAAAA TGAACAGAAG CTTTTAGAGT GGGTTAGATC TTATGTTTCT GATCCTAGGA AGTTCCATCA TATTGTAGAC
CCTCGACTTA AGGGGCAATA CTGCATCAAA TCAGCCCATA AACTTGCAAT CCTGGCAAAC AAATGCCTCA CAAAACAGCC
GAAGTCTCGC CCAAAAATGA GTGAGGTGGT TGAGTCTCTT GGAATCATTA TTATTGAGAC AGATACTCGG GATGAAGGGT
TTCCCCAAGC TGCTGTAACC GCTAGAGAAG AAAAAGAAGA GAAGGTATCT GTAGAGGAAA CTGAACCTGA ACCAGCGAAA
CAAGGGAACA ATTACCTGAA GAAGGTTTTT GAATTCAAAG ACATGGTCAG CTTAAGAAAC AAGTCTATTG GAAGGTTGGA
TTGGAAAAGT TGGGCGCCTG GGCTAGTAAG AAGCTGGTGA

[show][hide][copy]PROTEIN

>Vigan.06G200500.01
MKCFYFSNAE DEDCVAAAPS SRGSTSRVSW ARSLSLMDTR SRSNFDSDST EFSDTVDFHH FLVQRRANDL RIFPFSALKF
ATRGFNRALL VGEGGFGSVY RGVVEEKEVA IKQLNRNGQQ GHKEWINEVN LLGVVKHPNL VRLVGYCAED DERGIQRLLV
YEFMPNKSLE EHLLARVPST VLPWGTRLRI AQDAARGLAY LHEEMDFQLI FRDFKTSNIL LDENFNAKLS DFGLARQGPS
EGSGYVSTAV VGTIGYAAPE YVQTGKLTAK SDVWSFGVVL YELITGRRAV ERNLPKNEQK LLEWVRSYVS DPRKFHHIVD
PRLKGQYCIK SAHKLAILAN KCLTKQPKSR PKMSEVVESL GIIIIETDTR DEGFPQAAVT AREEKEEKVS VEETEPEPAK
QGNNYLKKVF EFKDMVSLRN KSIGRLDWKS WAPGLVRSW*