GBrowse Details

Vigan.06G200600.01

Basic Information:
Name: Vigan.06G200600.01
Multiple alignment
Variant Information
Position: Chr06:33686954..33688541 (- strand)
Length: 1588
Functional Information:
Description: Similar to Uncharacterized protein. [I1LK20, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.10,15.77,6.49,5.17,46.70,13.85,51.31
Automatic updates:
Name: NM_001256049 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-A4-like (EXP5A), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33686954..33687337 (- strand)
Length: 384
Type: three_prime_UTR
Position: Chr06:33687338..33687647 (- strand)
Length: 310
Type: CDS
Position: Chr06:33687932..33688250 (- strand)
Length: 319
Type: CDS
Position: Chr06:33688383..33688533 (- strand)
Length: 151
Type: CDS
Position: Chr06:33688534..33688541 (- strand)
Length: 8
Type: five_prime_UTR


>Vigan.06G200600.01
CAAGAAAAAT GGCAGTGCCA AGCATTTTGC TCTGCATTGT GCTTATCATC TCCTTAACAT GGATGGTTGA AGCACGCATT
CCGGGGATTT ACGCCGGCGG TGCATGGGAA AGTGCTCACG CAACCTTCTA CGGAGGATCC GATGCTTCCG GCACCATGGG
TGGAGCGTGT GGGTACGGGA ACCTGTACAG CCAAGGCTAC GGTGTGAACA CGGCGGCATT AAGCACGGCG CTTTTCAACA
ATGGCCTCAG CTGCGGCGCG TGCTTTGAGA TAAAGTGCGC TAACGACAGA CAGTGGTGTC ACTCGGGAAG TCCTTCCATC
TTCATCACAG CAACAAACTT TTGCCCTCCC AACTACGCTC TTCCAAACGA CAATGGCGGC TGGTGCAACC CTCCTCGTCC
TCACTTCGAC CTCGCCATGC CCATGTTCCT TAAAATTGCC GAATACCGAG CCGGAATTGT CCCTGTTGCC TTTCGCCGAG
TGCCATGTAG AAAGCACGGA GGGATAAGGT TCACCGTCAA CGGATTCCGT TACTTCAACC TGGTGCTGAT TAGCAACGTG
GCAGGTGCGG GGGATATCGT GCGCACTTAC GTGAAGGGGT CCCGAACCGG GTGGATGCCA ATGAGCCGAA ACTGGGGTCA
GAACTGGCAG TCAAACGCGG TTTTGGTGGG GCAGACGCTG TCGTTTCGCG TGACGGGCAG CGACCGCCGC ACCTCCACCT
CGTGGAACAT CGCTCCAGCC AATTGGCAAT TCGGTCAAAC TTTCATCGGA AAAAACTTCC GAGTCTGAAA CCATAATAAT
CATCGTGGAA CCACATTCAT GTCATCAACA TAAATGACAT AATTATATTT ATTATAATCT ATTTAACTGG ATTGATGGTG
ACATGTTGGT GAGTGAGAGG TTTTTAGTAG TGAGTAGACG TTGGTTTCTA ATAGTTTATT GATGTTGTGT CTTGAATTTG
TATGGTAGAC GAAATGGTGT AACAGGAGAG AGAGAGTGTG TAGGGATTGC TGAAGTGGCT TAATCAAAAT GGTAGCCCGC
AGCTAATTTG TATTTTCATC ATAGAATGAA CCATCATGAT GCTCTTGTAT ATTCGTATTT CGATTTAATT TTTGTTCTGT
CGATTTATCT GTATTGGTCT AGAAATCGAG TAGAAAAGGA AAAATGAGTA CA

>Vigan.06G200600.01
ATGGCAGTGC CAAGCATTTT GCTCTGCATT GTGCTTATCA TCTCCTTAAC ATGGATGGTT GAAGCACGCA TTCCGGGGAT
TTACGCCGGC GGTGCATGGG AAAGTGCTCA CGCAACCTTC TACGGAGGAT CCGATGCTTC CGGCACCATG GGTGGAGCGT
GTGGGTACGG GAACCTGTAC AGCCAAGGCT ACGGTGTGAA CACGGCGGCA TTAAGCACGG CGCTTTTCAA CAATGGCCTC
AGCTGCGGCG CGTGCTTTGA GATAAAGTGC GCTAACGACA GACAGTGGTG TCACTCGGGA AGTCCTTCCA TCTTCATCAC
AGCAACAAAC TTTTGCCCTC CCAACTACGC TCTTCCAAAC GACAATGGCG GCTGGTGCAA CCCTCCTCGT CCTCACTTCG
ACCTCGCCAT GCCCATGTTC CTTAAAATTG CCGAATACCG AGCCGGAATT GTCCCTGTTG CCTTTCGCCG AGTGCCATGT
AGAAAGCACG GAGGGATAAG GTTCACCGTC AACGGATTCC GTTACTTCAA CCTGGTGCTG ATTAGCAACG TGGCAGGTGC
GGGGGATATC GTGCGCACTT ACGTGAAGGG GTCCCGAACC GGGTGGATGC CAATGAGCCG AAACTGGGGT CAGAACTGGC
AGTCAAACGC GGTTTTGGTG GGGCAGACGC TGTCGTTTCG CGTGACGGGC AGCGACCGCC GCACCTCCAC CTCGTGGAAC
ATCGCTCCAG CCAATTGGCA ATTCGGTCAA ACTTTCATCG GAAAAAACTT CCGAGTCTGA 

>Vigan.06G200600.01
MAVPSILLCI VLIISLTWMV EARIPGIYAG GAWESAHATF YGGSDASGTM GGACGYGNLY SQGYGVNTAA LSTALFNNGL
SCGACFEIKC ANDRQWCHSG SPSIFITATN FCPPNYALPN DNGGWCNPPR PHFDLAMPMF LKIAEYRAGI VPVAFRRVPC
RKHGGIRFTV NGFRYFNLVL ISNVAGAGDI VRTYVKGSRT GWMPMSRNWG QNWQSNAVLV GQTLSFRVTG SDRRTSTSWN
IAPANWQFGQ TFIGKNFRV*