GBrowse Details

Vigan.06G200900.01

Basic Information:
Name: Vigan.06G200900.01
Multiple alignment
Variant Information
Position: Chr06:33702931..33705370 (- strand)
Length: 2440
Functional Information:
Description: Similar to Rab5-interacting family protein. [Q6NKV4, Arabidopsis thaliana]
InterPro: Rab5-interacting (IPR010742)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.89,9.87,12.74,9.65,20.77,15.86,25.39,11.72
Arabidopsis thaliana homolog: AT5G59410.1
Automatic updates:
Name: NM_001249327 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526939 (LOC100526939), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33702931..33703430 (- strand)
Length: 500
Type: three_prime_UTR
Position: Chr06:33703431..33703605 (- strand)
Length: 175
Type: CDS
Position: Chr06:33704547..33704650 (- strand)
Length: 104
Type: CDS
Position: Chr06:33704988..33705092 (- strand)
Length: 105
Type: CDS
Position: Chr06:33705093..33705370 (- strand)
Length: 278
Type: five_prime_UTR


>Vigan.06G200900.01
AAGAAAAGTA ATCTCTTATT CGATTGTTGA GATTTTAGGG AAAAAAGAGA TAGATTCTGA GTTGTTACTG TTAATGTAGA
TGAAATGCCA GATCGAACAT TAACAACCAA TTTCTGCAAT TTTTAATTTG CATTCAGATT CTCTTTTCCT TTCTAATCCT
AAACCCTAAT TTTCTTTTTT CACCCTCCAG CGTCGCCGAA ATCCCGAATT CTGTGTGAAG TACTTCACTC CCGATTACTC
TTTGTTTTTG ATTCTTATTC GTTGCTTCTT CTTCCACTAT GAAAGAGGGT AAATCCGTTA ACCATCAACA GCCGCACCAG
AACGGTCACC TCTCGCCTTC AAAATTCGCC AAATTGTTTG ATCCCGAAGC TTCCTGGGAC AAGGATCAGT TGGGAGACGT
TTTGCATTGG ATTAGACAAG GGCTTGGCCT TGTGTGTGGA TTCCTTTGGG GTTCCATACC TTTGGTTGGA GGCATATGGT
TCATCCTCTT TTTGGCACTA TCCACCGGGA TTATATATAG TTATTATGCA GTAATATTAA AGGTTGACGA GGAAGAGTTT
GGTGGTCATG GAGCCCTCCT TCAAGAGGGG CTATTTGCTT CTGTAACTCT TTTCCTGGTA TTATGCTCTG TTGTTCATTG
CTTTATATAC TGTAGAAAAT GAGGCTTTTA TGGTTCGACA GTCTGACTTC AACTTAATAT ATGTGCAGCT TTCCTGGATT
CTAGTTTACA GTTTAGCACA CTTCTGATTG GCTGGGCTTT GAAGATTTAA CAGAGTAGAG AGATTTACTT GATTACATTT
GCCCAAATTG CAGTTATCTG CTTTACTTCT ATGTAAAATG TTCTAATTTT GCAATGCATG CATGAACACT AGCTTCTGCA
TCCCATGGTA ATTGCTGTTT TAGTCAAGCA TTTCTAGTGT GACACATTGT ATTACAACAA ATTTTGTGGA TTGAACCCTG
AAATAAAGTT GTTTGCAGAC AAATCGTGAA GGACCATTTA TCCTTGATGT TTATGCCATA AACATAGAAT TCTCAAATAG
TCTCCCTCAT TTTGTTGGGG TGTTAGTGTT GCTGGTAGGG GATATATATT TTATTGTGGG GGAATTTGGT TGCAGCTGCT
AGCAACTGAT TGTTTAAGGA TCCAGTCTTG TGTATTTATG CC

>Vigan.06G200900.01
ATGAAAGAGG GTAAATCCGT TAACCATCAA CAGCCGCACC AGAACGGTCA CCTCTCGCCT TCAAAATTCG CCAAATTGTT
TGATCCCGAA GCTTCCTGGG ACAAGGATCA GTTGGGAGAC GTTTTGCATT GGATTAGACA AGGGCTTGGC CTTGTGTGTG
GATTCCTTTG GGGTTCCATA CCTTTGGTTG GAGGCATATG GTTCATCCTC TTTTTGGCAC TATCCACCGG GATTATATAT
AGTTATTATG CAGTAATATT AAAGGTTGAC GAGGAAGAGT TTGGTGGTCA TGGAGCCCTC CTTCAAGAGG GGCTATTTGC
TTCTGTAACT CTTTTCCTGG TATTATGCTC TGTTGTTCAT TGCTTTATAT ACTGTAGAAA ATGA

>Vigan.06G200900.01
MKEGKSVNHQ QPHQNGHLSP SKFAKLFDPE ASWDKDQLGD VLHWIRQGLG LVCGFLWGSI PLVGGIWFIL FLALSTGIIY
SYYAVILKVD EEEFGGHGAL LQEGLFASVT LFLVLCSVVH CFIYCRK*