GBrowse Details

Vigan.06G202200.01

Basic Information:
Name: Vigan.06G202200.01
Multiple alignment
Variant Information
Position: Chr06:33786725..33790697 (- strand)
Length: 3973
Functional Information:
Description: Similar to E3 ubiquitin-protein ligase SDIR1-like. [XP_006592188.1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.92,49.12,4.60,3.47,3.95,25.70,0.89,8.88
Automatic updates:
Name: NM_001252856 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max E3 ubiquitin-protein ligase SDIR1-like (LOC100805406), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33786725..33786807 (- strand)
Length: 83
Type: three_prime_UTR
Position: Chr06:33786808..33786933 (- strand)
Length: 126
Type: CDS
Position: Chr06:33787680..33787805 (- strand)
Length: 126
Type: CDS
Position: Chr06:33788284..33788326 (- strand)
Length: 43
Type: CDS
Position: Chr06:33789012..33789126 (- strand)
Length: 115
Type: CDS
Position: Chr06:33789267..33789495 (- strand)
Length: 229
Type: CDS
Position: Chr06:33789601..33789653 (- strand)
Length: 53
Type: CDS
Position: Chr06:33789737..33789791 (- strand)
Length: 55
Type: CDS
Position: Chr06:33789905..33789982 (- strand)
Length: 78
Type: CDS
Position: Chr06:33789983..33790697 (- strand)
Length: 715
Type: five_prime_UTR


>Vigan.06G202200.01
GGGAGCGTTT TGTGTGGGAA TTGAGTAAGT TGTTAAATAC ATGGGAAGGG GGAGTTTTTT TTCACTCTTT AAGTTATTAT
GTATACCTAC ATTTCTTTTT TGCAATGTTG GACCGGCCAT GATGTACAAT TCATTATTTC TTGTACTGAA TTTCATAAAA
CTGTTCTGAC ACTTACAATC TCCTGAGCTA ATGAGACATA AACCTATATA GGTCAATGGC TTTAGCTTTG GCCTCAAAAA
CAAAAATTAT TCACCATTGT TTTGACAAGA GAAAAGAATG GCCTATCCCG CTATCTTTCA GAAGTTATGA ATCTAATCTT
CAAGAGGTGG ATCTCGTTAG CTTCAAATTG TAGTTTTGCA AGCAATGCAC CTTGATGAGC CTAATGATCT ATTTCTCTGT
TTTGCAAAAA AATTGTCTAG ATAAGGTACT GGAATGTGAG ATGTGATTTA TCATCTAATC TTCAAACAAT AAAAATTATC
TTTGCTGCCA ATAACCATCA ATCTATAAAA ATGTGTTTAC TGCGACTAAT TATTCAGTAT TCACAAATTC ATGGGTGGAA
TTATGTGTGC TTGTTTGATT CTTGAATGAC TTAATATATG TTTATTCTTT CATAATCAGT TTACAAATTT GTGTTATTGT
AACGTTTGAA CATCGATTAA TAGCTCGCAG GTAGTGTTGT CGTGAATTGT TGGCTGAGCG AGCTCCTTTG CAATCATGAG
TTTTGTCTTC CGAGGGAGTA GGGGAGATAT TGAAAGTGGA TTTTCAGAAT ATGTTCCTGA AAGAACCTTG ATGAGGGTTC
ATCCAGCTCG CCCAGTTAAT GGCAATTCTT TAGCTTTTCT TATCACAGTT ATTTTGATAT TCATGATATT AAACTCCCCT
CAAATGCTAC ATCATTTTTT GCTCTGGGTT GTACTGGCTA TCTTTGTGAT GGCTACAAGT CTGAGGATGT ATGCAACTTG
TCAACAACTT CAGGCACAGG CTAGGGCTCA TGCTGCAGCA GCCTCTGGGT TGCTTGGCCA TACTGAACTC CGTCTTCACA
TGCCACCATC GATTGCAATT GCAACCAGAG GAAGACTGCA GGGACTTAGA CTTCAGCTTG CACTTCTTGA CCGTGAATTT
GATGAGCTAG ATTATGATAC TTTGAGAGCT CTTGACACTG ATACTGCTCC TAGTACCCAT TCAATGACTG AGGAAGAGAT
AAATGCCTTG CCTATTCACA CATATAAAAT TCCAGTCCCA CCAAAGGATG GCTCAGCCGG TCTGGCATCC TCTTCAGGTG
CAGCTGAGAT TAAACAAGAA TCTGGAGGAA CAGAGGCAGG TATCAGAGGC TCAGAAGATG AGCTGACATG TACTATATGC
TTGGACCAAG TCAAGAGGGG GGAGCTTGTT CGTAGCTTAC CATGCTTGCA TCAGTTTCAT GCTAACTGCA TTGATCCTTG
GCTCCAGCAA CAAGGGACAT GTCCTGTGTG CAAATTAAGG ATAGGGTCGG GAAGTGGGGG AACCAGGGAG AGCGAATCCG
ATGGTTCAGA TATTGCGTAA TCTGATGGTT TAGATATGGC TGTAAAATGC ATAATGTGAT GCCTTGAAGT GTATCTTCAT
GGAAACAAGT ATATATATAT ATA

>Vigan.06G202200.01
ATGAGTTTTG TCTTCCGAGG GAGTAGGGGA GATATTGAAA GTGGATTTTC AGAATATGTT CCTGAAAGAA CCTTGATGAG
GGTTCATCCA GCTCGCCCAG TTAATGGCAA TTCTTTAGCT TTTCTTATCA CAGTTATTTT GATATTCATG ATATTAAACT
CCCCTCAAAT GCTACATCAT TTTTTGCTCT GGGTTGTACT GGCTATCTTT GTGATGGCTA CAAGTCTGAG GATGTATGCA
ACTTGTCAAC AACTTCAGGC ACAGGCTAGG GCTCATGCTG CAGCAGCCTC TGGGTTGCTT GGCCATACTG AACTCCGTCT
TCACATGCCA CCATCGATTG CAATTGCAAC CAGAGGAAGA CTGCAGGGAC TTAGACTTCA GCTTGCACTT CTTGACCGTG
AATTTGATGA GCTAGATTAT GATACTTTGA GAGCTCTTGA CACTGATACT GCTCCTAGTA CCCATTCAAT GACTGAGGAA
GAGATAAATG CCTTGCCTAT TCACACATAT AAAATTCCAG TCCCACCAAA GGATGGCTCA GCCGGTCTGG CATCCTCTTC
AGGTGCAGCT GAGATTAAAC AAGAATCTGG AGGAACAGAG GCAGGTATCA GAGGCTCAGA AGATGAGCTG ACATGTACTA
TATGCTTGGA CCAAGTCAAG AGGGGGGAGC TTGTTCGTAG CTTACCATGC TTGCATCAGT TTCATGCTAA CTGCATTGAT
CCTTGGCTCC AGCAACAAGG GACATGTCCT GTGTGCAAAT TAAGGATAGG GTCGGGAAGT GGGGGAACCA GGGAGAGCGA
ATCCGATGGT TCAGATATTG CGTAA

>Vigan.06G202200.01
MSFVFRGSRG DIESGFSEYV PERTLMRVHP ARPVNGNSLA FLITVILIFM ILNSPQMLHH FLLWVVLAIF VMATSLRMYA
TCQQLQAQAR AHAAAASGLL GHTELRLHMP PSIAIATRGR LQGLRLQLAL LDREFDELDY DTLRALDTDT APSTHSMTEE
EINALPIHTY KIPVPPKDGS AGLASSSGAA EIKQESGGTE AGIRGSEDEL TCTICLDQVK RGELVRSLPC LHQFHANCID
PWLQQQGTCP VCKLRIGSGS GGTRESESDG SDIA*