GBrowse Details

Vigan.06G204900.01

Basic Information:
Name: Vigan.06G204900.01
Multiple alignment
Variant Information
Position: Chr06:34004323..34008207 (+ strand)
Length: 3885
Functional Information:
Description: Similar to TPR-containing protein kinase. [Q56I14, Glycine max]
GO: Biological Process: protein phosphorylation (GO:0006468)
Molecular Function: protein kinase activity (GO:0004672)
Molecular Function: protein binding (GO:0005515)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro: Protein kinase domain (IPR000719)
Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245)
Protein kinase-like domain (IPR011009)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:70.37,27.55,16.44,9.94,8.60,27.32,9.99,15.65
Arabidopsis thaliana homolog: AT1G01740.1, AT1G63500.1, AT3G09240.1, AT3G54030.1, AT4G00710.1, AT4G35230.1, AT5G01060.1, AT5G41260.1, AT5G46570.1, AT5G59010.1
Automatic updates:
Name: NM_001249779 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TPR-containing protein kinase (LOC732542), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:34004323..34004756 (+ strand)
Length: 434
Type: five_prime_UTR
Position: Chr06:34004757..34004838 (+ strand)
Length: 82
Type: CDS
Position: Chr06:34004944..34005167 (+ strand)
Length: 224
Type: CDS
Position: Chr06:34005275..34005410 (+ strand)
Length: 136
Type: CDS
Position: Chr06:34005652..34005785 (+ strand)
Length: 134
Type: CDS
Position: Chr06:34005862..34005967 (+ strand)
Length: 106
Type: CDS
Position: Chr06:34006058..34006143 (+ strand)
Length: 86
Type: CDS
Position: Chr06:34006347..34006535 (+ strand)
Length: 189
Type: CDS
Position: Chr06:34006699..34006863 (+ strand)
Length: 165
Type: CDS
Position: Chr06:34007231..34007344 (+ strand)
Length: 114
Type: CDS
Position: Chr06:34007711..34007953 (+ strand)
Length: 243
Type: CDS
Position: Chr06:34007954..34008207 (+ strand)
Length: 254
Type: three_prime_UTR


>Vigan.06G204900.01
ATAATTGAAA AGGGTAAAAG CAAGGAAGTG CAAAGGTGTG TGAGAAGAAA GGAGGAATGA TGAAGAGAAG AGGTGACTGA
TATCATTCAT TCACTGCAGC AGGAGCAGCA CCACCGCAGC AAACACACAC CAAAGAAAAA AAGAAAACCT TTCGATCCCA
AAAAAGTCAT ATTTTTTCCC ACCCCACTTT CTCTCTTCCC AAACACCGCC GTATTTCGCT TTCTCCTTTC TTTTATCCCT
TCCATGCCAT ACTCCTTTTC AATTTCCCTT TTTTAATCTT ATCTTTCTTC TCTCTAACCC CTTCTTCCAT TAAACTGACA
CATCAAGACC TGTTGCTGTT GGAGAGCAAA AGGGTCTCAT TTACTCTCTC TCTTTCTCTC TCTCACACAC AACACACATA
CTCTTTTTTC TCTTCTGTGA TTGCACTCTC TCCGATGGGA GCTCGTTGCT CTAAATTCTC TCTCTGCTGG TGGCCTTCCC
ACGTCAAATC AAACCTCCAT GATTTGTCTG ATAATGATGA TGATGGGAAG AGGAATGAGA AGGATCCTTG GGGAGGGTTC
AGTGAGTACA GTTTGGATCA GCTGAGAGTT GCCACCTCAG GATTCTCACC AGACAACATT GTCTCGGAAC ACGGTGAGAA
GGCTCCAAAT GTTGTCTACA AAGGGAGGCT TGAGGACGAT AGGACGGTTG CTGTGAAGCG CTTCAATAAG TCTGCTTGGC
CTGATTCTCG ACAATTCCTA GAGGAGGCAC GTGCTGTGGG GCAACTGAGG AGTGAAAGAT TGGCTAACTT GGTTGGGTGT
TGCTGTGAGG GAGAAGAGAG ATTGCTTGTT GCAGAGTTCA TGCCCAATGA AACTCTCTCT AAACACCTTT TTCATTGGGA
GGCCCAGCCT ATGAAATGGG CAATGAGGCT GAGGGTGGCC TTGTATTTAG CTCAAGCTTT GGAATACTGC AGCAGTAAAG
GAAGGGCATT GTACCATGAT CTTAATGCTT ATAGAATTTT GTTTGATCAG GAAGGCAACC CTAGACTCTC TTGTTTTGGA
CTCATGAAAA ACAGTAGGGA TGGCAGAAGC TATAGTACAA ATTTAGCCTT CACACCTCCA GAGTACTTGA GGACAGGAAG
AATCACTGCT GAAAGTGTAG TTTACAGTTT TGGCACCCTA TTACTTGATC TTCTCAGTGG AAAGCATATC CCACCGAGTC
ATGCACTTGA TCTTATACGA GGCAAAAATT TTCTGTTGCT AATGGACTCA TGTTTGGAAG GTCATTTTTC AAATGATGAT
GGAACTGAGT TAGTGAGATT AGCTTCGCGC TGTTTACAGT ATGAACCTCG TGAGAGACCA AATGTTAAGT CGCTCGTGAC
TGCTCTGACC CCTCTTCAGA AAGAAACTTC GGTACCGTCA TATGTTTTAA TGGGCATACC AGATAGGAGT CTGTCATCAA
AGGAAACAGT TTCATTAACA CCATTTGGTG ACGCTTGTTC CAGAAGAGAT CTGACTGCAG TACATGAGAT TTTGGATAAA
GTGGGCTACA AGGATGATGA AGATGTTGCT AATGAGCTTT CCTTTCAAAT GTGGACAAAT CAAATACAAG ATACTCTAAA
TTCTAAGAAG CAAGGCGATT CTGCTTTCCA TGCTAGAGAC TTCTCTACAG CCATTGACTG CTATACACAA TTCATCGATG
GTGGAACCAT GGTATCACCT ACCGTGTATG CCAGACGCTG CTTATGCTAT CTGATGAATG ACATGGCTCA AGAGGCACTT
GGAGATGCCA TGCATGCTCA ATCAATATCT CCAACCTGGC CCACTGCATA CTATCTTCAA GCAGCTGCTC TCTTCAACCT
TGGCATGGAC AATGATGCAC AGGAAAGTCT TAAAGATGGA ACAACACTGG AAACCAGGAA GTATAGAAAC TGAAACTGTA
TAGTCTTTTT CTCTCTTCTA CTTCCCCTCA TTGATCAAGC GAAATTTTTA CATATCACTG TTAGTTGTAT GTAATTTATA
TATGCTTTTT AGACTCCTAC GATGACTCTA TGGCCTCCCT GCATTCTCTT GTATTTTTGG TCCAATGATG TGAATCTCAT
TGCTCAGATT CTCATTAAAG ATTTCCTATT TCCAACCTAA ATACTTAACA AATTCACGAA CTAGTAAATA TTAGTATTTG
ATTCACG

>Vigan.06G204900.01
ATGGGAGCTC GTTGCTCTAA ATTCTCTCTC TGCTGGTGGC CTTCCCACGT CAAATCAAAC CTCCATGATT TGTCTGATAA
TGATGATGAT GGGAAGAGGA ATGAGAAGGA TCCTTGGGGA GGGTTCAGTG AGTACAGTTT GGATCAGCTG AGAGTTGCCA
CCTCAGGATT CTCACCAGAC AACATTGTCT CGGAACACGG TGAGAAGGCT CCAAATGTTG TCTACAAAGG GAGGCTTGAG
GACGATAGGA CGGTTGCTGT GAAGCGCTTC AATAAGTCTG CTTGGCCTGA TTCTCGACAA TTCCTAGAGG AGGCACGTGC
TGTGGGGCAA CTGAGGAGTG AAAGATTGGC TAACTTGGTT GGGTGTTGCT GTGAGGGAGA AGAGAGATTG CTTGTTGCAG
AGTTCATGCC CAATGAAACT CTCTCTAAAC ACCTTTTTCA TTGGGAGGCC CAGCCTATGA AATGGGCAAT GAGGCTGAGG
GTGGCCTTGT ATTTAGCTCA AGCTTTGGAA TACTGCAGCA GTAAAGGAAG GGCATTGTAC CATGATCTTA ATGCTTATAG
AATTTTGTTT GATCAGGAAG GCAACCCTAG ACTCTCTTGT TTTGGACTCA TGAAAAACAG TAGGGATGGC AGAAGCTATA
GTACAAATTT AGCCTTCACA CCTCCAGAGT ACTTGAGGAC AGGAAGAATC ACTGCTGAAA GTGTAGTTTA CAGTTTTGGC
ACCCTATTAC TTGATCTTCT CAGTGGAAAG CATATCCCAC CGAGTCATGC ACTTGATCTT ATACGAGGCA AAAATTTTCT
GTTGCTAATG GACTCATGTT TGGAAGGTCA TTTTTCAAAT GATGATGGAA CTGAGTTAGT GAGATTAGCT TCGCGCTGTT
TACAGTATGA ACCTCGTGAG AGACCAAATG TTAAGTCGCT CGTGACTGCT CTGACCCCTC TTCAGAAAGA AACTTCGGTA
CCGTCATATG TTTTAATGGG CATACCAGAT AGGAGTCTGT CATCAAAGGA AACAGTTTCA TTAACACCAT TTGGTGACGC
TTGTTCCAGA AGAGATCTGA CTGCAGTACA TGAGATTTTG GATAAAGTGG GCTACAAGGA TGATGAAGAT GTTGCTAATG
AGCTTTCCTT TCAAATGTGG ACAAATCAAA TACAAGATAC TCTAAATTCT AAGAAGCAAG GCGATTCTGC TTTCCATGCT
AGAGACTTCT CTACAGCCAT TGACTGCTAT ACACAATTCA TCGATGGTGG AACCATGGTA TCACCTACCG TGTATGCCAG
ACGCTGCTTA TGCTATCTGA TGAATGACAT GGCTCAAGAG GCACTTGGAG ATGCCATGCA TGCTCAATCA ATATCTCCAA
CCTGGCCCAC TGCATACTAT CTTCAAGCAG CTGCTCTCTT CAACCTTGGC ATGGACAATG ATGCACAGGA AAGTCTTAAA
GATGGAACAA CACTGGAAAC CAGGAAGTAT AGAAACTGA

>Vigan.06G204900.01
MGARCSKFSL CWWPSHVKSN LHDLSDNDDD GKRNEKDPWG GFSEYSLDQL RVATSGFSPD NIVSEHGEKA PNVVYKGRLE
DDRTVAVKRF NKSAWPDSRQ FLEEARAVGQ LRSERLANLV GCCCEGEERL LVAEFMPNET LSKHLFHWEA QPMKWAMRLR
VALYLAQALE YCSSKGRALY HDLNAYRILF DQEGNPRLSC FGLMKNSRDG RSYSTNLAFT PPEYLRTGRI TAESVVYSFG
TLLLDLLSGK HIPPSHALDL IRGKNFLLLM DSCLEGHFSN DDGTELVRLA SRCLQYEPRE RPNVKSLVTA LTPLQKETSV
PSYVLMGIPD RSLSSKETVS LTPFGDACSR RDLTAVHEIL DKVGYKDDED VANELSFQMW TNQIQDTLNS KKQGDSAFHA
RDFSTAIDCY TQFIDGGTMV SPTVYARRCL CYLMNDMAQE ALGDAMHAQS ISPTWPTAYY LQAAALFNLG MDNDAQESLK
DGTTLETRKY RN*