VIGGS:GBrowse

Vigan.06G205800.01

Basic Information:

Name:	Vigan.06G205800.01 Multiple alignment Variant Information
Position:	Chr06:34071284..34074226 (+ strand)
Length:	2943

Functional Information:

Description:	Similar to Aldehyde dehydrogenase. [V7AGM5, Phaseolus vulgaris]
GO:	Biological Process: cellular aldehyde metabolic process (GO:0006081)
	Biological Process: metabolic process (GO:0008152)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
InterPro:	Aldehyde dehydrogenase NAD(P)-dependent (IPR012394)
	Aldehyde dehydrogenase domain (IPR015590)
	Aldehyde/histidinol dehydrogenase (IPR016161)
	Aldehyde dehydrogenase, N-terminal (IPR016162)
	Aldehyde dehydrogenase, C-terminal (IPR016163)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.33,1.14,17.64,21.96,0.11,5.74,0.11,13.61
Arabidopsis thaliana homolog:	AT4G36250.1

Automatic updates:

Name:	NM_001367168 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max aldehyde dehydrogenase family 3 member J2 (ALDH3J2), mRNA.
PubMed ID:	28687067 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:34071284..34071523 (+ strand)
Length:	240
Type:	five_prime_UTR

Position:	Chr06:34071524..34071721 (+ strand)
Length:	198
Type:	CDS

Position:	Chr06:34071842..34071910 (+ strand)
Length:	69
Type:	CDS

Position:	Chr06:34072013..34072109 (+ strand)
Length:	97
Type:	CDS

Position:	Chr06:34072208..34072414 (+ strand)
Length:	207
Type:	CDS

Position:	Chr06:34072615..34072844 (+ strand)
Length:	230
Type:	CDS

Position:	Chr06:34072952..34073124 (+ strand)
Length:	173
Type:	CDS

Position:	Chr06:34073323..34073413 (+ strand)
Length:	91
Type:	CDS

Position:	Chr06:34073523..34073672 (+ strand)
Length:	150
Type:	CDS

Position:	Chr06:34073755..34074021 (+ strand)
Length:	267
Type:	CDS

Position:	Chr06:34074022..34074226 (+ strand)
Length:	205
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G205800.01
AAGACAACGG AGTTTGGAAG AAGACTGGAC GGCAAGAAGG CAAACTGTGA AGGTGCCGAG TGACTCAACC CGAAACACAG
CCCTTAATTG ATCTATGACA AAAATCATGT GAATGACAGA ATGCACAGGG CCCTTCCCCT TTATGAAAGC CAAACTAAGT
TTCCATTGAA GTGTTGGAGT TAGTTGAGCA AATATAAATA CTGGTTGCTG AGAGCTTAAG CAGCTGCACC CCAAAGGAAC
ATGGAGATCA TGTCAAGCTT CGACAGAGAC CTCAATGACA TGAGGGAGTA TTATGAGAGC GGAAAGACTA AGCAAGCATC
TTGGAGAGAA TCTCAGCTCA AATCCTTGCG TTGCTTCCTC ATGGAAAAAC AACAACATAT CATGGAGGCC CTTATGCAGG
ATCTTGGGAA ACATCAACTT GAAGCTTTCA GAGACGAGAT AGGGACTTTG ATCAAGACCT TAAATCTGGC ATTGAAGTCT
TTGAAAGCTT GGATGTCAGG CAAAAAGGCT GAATTGCCAC AAGTAGCATT GCTCACCAGT GCAGAAATTG TTTCAGAACC
ACTTGGTCTG GTCCTCATTA TTTCATCTTG GAATTTCCCA TTTGGACTAT CCTTGGAGCC ACTTATTGGA GCAATAGCTG
CGGGAAACGT GGCAATCTTA AAGCCTTCAG AGTTGTCTCC AGCTTCTTCT TCTCTACTCG CTTCCAGTCT CACCTCTTAT
TTGGACAATA AAGCCATTAA GGTGATCCAA GGAGGACCAC AAGAGACCCA ACAGCTACTA GAGCAAAGAT GGGACAAAAT
CTTCTTCACA GGAAGTGCAC GTGTGGGGCG GATTGTTATG TCTGCTGCTG TGAAGAATTT GACTCCTGTG ACTTTGGAGT
TGGGTGGAAA ATGCCCTGCA GTTGTTGACT CCCTTTCATC TTCCTGGGAT ATAGAGGCCA CTGTGAAGAG AATTGTTGTG
GGAAAATTTG GGACTTGTGC TGGTCAAGCA TGCATAGCCA TTGATTATGT CCTGGTGGAA AATAAGTATT GCTCAAAACT
GGTGGAACTG ATGAAGGTCT GGATCAAGAA AATGTTTGGA GAGAACCCTC AACGGTCCAA AACTATCACC AGGATAGTTA
ACAAACACCA CTTCTCTAGA TTGAACAACC TTCTTGCTGA TAAAATGGTC AAAGAATCAG TGGTTTATGG TGGCTCAGTG
GACGAAGAAA ACTTATTTAT TGAGCCAACC ATCTTGGTGG ATCCCCCACT GGACGCAGCA ATTATGTCAG AAGAGATCTT
TGGACCATTA CTTCCAATTA TTACTGTAGA GAAGATTGAG GACAGTATTA GATTCATAAG GAGTAGGCCT AAGCCTCTTG
CCCTTTATGT CTTCACCAAA AACAAAACCC TAGAGAGAAG AATGATATCT GAAACATCAT CTGGCAGTTT AACTTTCAAT
GATGCAATAC TACAATATGC AGCTGATTCT CTTCCATTTG GAGGAGTGGG AGAAAGTGGG TTTGGCATGT ACCATGGGAA
GTTCTCCTTT GACACATTTA GCCACCAGAA GGCAATAGTA AGAAGAAGTT TTCTCACTGA TTTCTGGTTT AGATATCCTC
CATGGACACT AAATAAGTTG CAACTACTTG AAGAGTGTTA CAACTATGAT TATCTGGGGA TGTTCCTTGT CATGCTGGGC
TTGAAGAGAT CATCAAAACG CTTATTTGCA AATCATATGT AGCTGTATAG GATCTTACTA ATATGAGAAC AATACACACT
GTCATTTGTT TCTTGTGAAA AACCAGAAAA CTGTAATGTT TTCCTTTTCT TTTCTTACAA AGTCCAATAA AAATTGTTCC
ATGTGCAATT AGTCTTCCGT ACAAAATTTG CCTATTAAAT TCTTATGCAG CTTTATTTGA CCTTATCTGG TTGTCACTGA
ACTCCAA

[show][hide][copy]CDS

>Vigan.06G205800.01
ATGGAGATCA TGTCAAGCTT CGACAGAGAC CTCAATGACA TGAGGGAGTA TTATGAGAGC GGAAAGACTA AGCAAGCATC
TTGGAGAGAA TCTCAGCTCA AATCCTTGCG TTGCTTCCTC ATGGAAAAAC AACAACATAT CATGGAGGCC CTTATGCAGG
ATCTTGGGAA ACATCAACTT GAAGCTTTCA GAGACGAGAT AGGGACTTTG ATCAAGACCT TAAATCTGGC ATTGAAGTCT
TTGAAAGCTT GGATGTCAGG CAAAAAGGCT GAATTGCCAC AAGTAGCATT GCTCACCAGT GCAGAAATTG TTTCAGAACC
ACTTGGTCTG GTCCTCATTA TTTCATCTTG GAATTTCCCA TTTGGACTAT CCTTGGAGCC ACTTATTGGA GCAATAGCTG
CGGGAAACGT GGCAATCTTA AAGCCTTCAG AGTTGTCTCC AGCTTCTTCT TCTCTACTCG CTTCCAGTCT CACCTCTTAT
TTGGACAATA AAGCCATTAA GGTGATCCAA GGAGGACCAC AAGAGACCCA ACAGCTACTA GAGCAAAGAT GGGACAAAAT
CTTCTTCACA GGAAGTGCAC GTGTGGGGCG GATTGTTATG TCTGCTGCTG TGAAGAATTT GACTCCTGTG ACTTTGGAGT
TGGGTGGAAA ATGCCCTGCA GTTGTTGACT CCCTTTCATC TTCCTGGGAT ATAGAGGCCA CTGTGAAGAG AATTGTTGTG
GGAAAATTTG GGACTTGTGC TGGTCAAGCA TGCATAGCCA TTGATTATGT CCTGGTGGAA AATAAGTATT GCTCAAAACT
GGTGGAACTG ATGAAGGTCT GGATCAAGAA AATGTTTGGA GAGAACCCTC AACGGTCCAA AACTATCACC AGGATAGTTA
ACAAACACCA CTTCTCTAGA TTGAACAACC TTCTTGCTGA TAAAATGGTC AAAGAATCAG TGGTTTATGG TGGCTCAGTG
GACGAAGAAA ACTTATTTAT TGAGCCAACC ATCTTGGTGG ATCCCCCACT GGACGCAGCA ATTATGTCAG AAGAGATCTT
TGGACCATTA CTTCCAATTA TTACTGTAGA GAAGATTGAG GACAGTATTA GATTCATAAG GAGTAGGCCT AAGCCTCTTG
CCCTTTATGT CTTCACCAAA AACAAAACCC TAGAGAGAAG AATGATATCT GAAACATCAT CTGGCAGTTT AACTTTCAAT
GATGCAATAC TACAATATGC AGCTGATTCT CTTCCATTTG GAGGAGTGGG AGAAAGTGGG TTTGGCATGT ACCATGGGAA
GTTCTCCTTT GACACATTTA GCCACCAGAA GGCAATAGTA AGAAGAAGTT TTCTCACTGA TTTCTGGTTT AGATATCCTC
CATGGACACT AAATAAGTTG CAACTACTTG AAGAGTGTTA CAACTATGAT TATCTGGGGA TGTTCCTTGT CATGCTGGGC
TTGAAGAGAT CATCAAAACG CTTATTTGCA AATCATATGT AG

[show][hide][copy]PROTEIN

>Vigan.06G205800.01
MEIMSSFDRD LNDMREYYES GKTKQASWRE SQLKSLRCFL MEKQQHIMEA LMQDLGKHQL EAFRDEIGTL IKTLNLALKS
LKAWMSGKKA ELPQVALLTS AEIVSEPLGL VLIISSWNFP FGLSLEPLIG AIAAGNVAIL KPSELSPASS SLLASSLTSY
LDNKAIKVIQ GGPQETQQLL EQRWDKIFFT GSARVGRIVM SAAVKNLTPV TLELGGKCPA VVDSLSSSWD IEATVKRIVV
GKFGTCAGQA CIAIDYVLVE NKYCSKLVEL MKVWIKKMFG ENPQRSKTIT RIVNKHHFSR LNNLLADKMV KESVVYGGSV
DEENLFIEPT ILVDPPLDAA IMSEEIFGPL LPIITVEKIE DSIRFIRSRP KPLALYVFTK NKTLERRMIS ETSSGSLTFN
DAILQYAADS LPFGGVGESG FGMYHGKFSF DTFSHQKAIV RRSFLTDFWF RYPPWTLNKL QLLEECYNYD YLGMFLVMLG
LKRSSKRLFA NHM*