GBrowse Details

Vigan.06G211100.01

Basic Information:
Name: Vigan.06G211100.01
Multiple alignment
Variant Information
Position: Chr06:34537359..34545342 (+ strand)
Length: 7984
Functional Information:
Description: Similar to Ariadne B subfamily protein. [S4UQ25, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RanBP2-type (IPR001876)
Zinc finger, C6HC-type (IPR002867)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.98,42.61,21.77,21.77,21.44,13.99,21.96,19.01
Arabidopsis thaliana homolog: AT1G05890.2, AT1G65430.1, AT2G31510.1, AT2G31760.1, AT2G31770.1
Automatic updates:
Name: JX392390 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ariadne B subfamily protein (ARI1) mRNA, complete cds.
PubMed ID: 25364908 NCBI(pubmed)
Status: Known Variant
Name: JX392391 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ariadne B subfamily protein (ARI2) mRNA, complete cds.
PubMed ID: 25364908 NCBI(pubmed)
Status: Known Variant
Name: NM_001282133 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative E3 ubiquitin-protein ligase ARI2 (ARI2), mRNA.
PubMed ID: 25364908 NCBI(pubmed)
Status: Known Variant
Name: NM_001289243 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative E3 ubiquitin-protein ligase ARI1 (ARI1), mRNA.
PubMed ID: 25364908 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:34537359..34537737 (+ strand)
Length: 379
Type: five_prime_UTR
Position: Chr06:34537738..34537905 (+ strand)
Length: 168
Type: CDS
Position: Chr06:34538553..34538677 (+ strand)
Length: 125
Type: CDS
Position: Chr06:34538847..34538955 (+ strand)
Length: 109
Type: CDS
Position: Chr06:34539708..34539798 (+ strand)
Length: 91
Type: CDS
Position: Chr06:34540041..34540213 (+ strand)
Length: 173
Type: CDS
Position: Chr06:34540813..34540920 (+ strand)
Length: 108
Type: CDS
Position: Chr06:34541014..34541102 (+ strand)
Length: 89
Type: CDS
Position: Chr06:34541866..34541973 (+ strand)
Length: 108
Type: CDS
Position: Chr06:34542303..34542393 (+ strand)
Length: 91
Type: CDS
Position: Chr06:34542515..34542604 (+ strand)
Length: 90
Type: CDS
Position: Chr06:34543314..34543361 (+ strand)
Length: 48
Type: CDS
Position: Chr06:34543655..34543726 (+ strand)
Length: 72
Type: CDS
Position: Chr06:34544054..34544153 (+ strand)
Length: 100
Type: CDS
Position: Chr06:34544237..34544363 (+ strand)
Length: 127
Type: CDS
Position: Chr06:34544471..34544741 (+ strand)
Length: 271
Type: CDS
Position: Chr06:34544742..34545342 (+ strand)
Length: 601
Type: three_prime_UTR


>Vigan.06G211100.01
GTCTGCTCAA GCTTCCTTTG GTTTGGATTG TTTTGATAGT TTCCTTCTCT TCTCACTTTC CTATTTTCCA TTCTTCCTCT
TCTTTTCCTC TCTCTTCATT ATTCTTCCCC TCTTTTTGGG TCCTAATAAT TAATTACCCT TCTATATCTC TCCCTCTTCC
TAATTTCTAT TTTCTCACTA TTTATAACCA TATTTTTTCC TTTCTCCTTT TCTCCCTTTC GCTTCCCCCA AAAAACCAGA
CAAATATCGA AGCAAGGGGA ACAACCGCAT TCTTCCCTTT CTTTCTTCCA TCTCCCAATT CTCTTGCCCT AGATTTTTCC
CCTTTTCTCT GCACACCGAT TATTGCCTTC TTGATTCTTC TTTCCCTTAG GTTTCCTCGA TGCAGTCGGA GGATGACATG
CACGACGCCA ACGACATCGA TTCCCTCGAC GACGATTTCT ACAGCGGCGA AACCGAGGAT GCGCCCTTGG ACTACTACAG
CGATTACGAC GATGAGGCCG ATGATTACTT CGAAGAAGCT GACAGGATTG AGTCTCGTCG TCCTGAGCAA AATTTTACCA
TTTTGAAGGA ATCCGACATC AAACAAAGAC AGGAAGAAGA TGTCACTAGA GTAGCAACTG TTCTTTCCAT ATCAAGAATT
TTTGCAAGCA TACTACTTCG TTACTACAAT TGGAGTGTCA GTAGAGTGCA TGATGCATGG TTTGCTGATG AAGAACAAGT
CAGAAAATCA GTTGGTTTGT TGGAGAAGCC AATTGTCCAG CATGATAATA ATACTAGAGA GCTTACTTGC GGTATCTGTT
TTGAAAATTA TCCTCGGGCT AGAATTGAAA TGGCTTCCTG TGGTCATCCC TACTGTATCT CATGCTGGGA AGGCTATATC
AGCACATCCA TTAGTGATGG TCCCGGATGT TTGATGCTGA GATGTCCTGA TCCCACTTGT GGTGCTGCTG TCGGTCAAGA
TATGATTAGT CTTCTAAAAT CTGATGAAGA TAAGCAGAAA TATGCACGTT ATCTTCTTAG GTCATACATT GAAGACAATA
AGAAGTCCAA GTGGTGTCCT GCTCCAGGTT GTGAATGTGC TGTCACTTTT GATGCTGTTA GTGTTGGGAA TTACGATGTC
TCTTGCCTCT GTTCATATAG TTTTTGTTGG AATTGCACTG AGGAGGCTCA TCGTCCAGTA GACTGTGGGA CTGTGGCAAA
GTGGATTTTG AAGAACAGTG CAGAATCTGA AAACATGAAT TGGATACTTG CTAATTCAAA GCCATGTCCC AAGTGCAAGC
GACCAATTGA AAAAAATCAA GGGTGCATGC ACATGACTTG CACACCGCCC TGTAAATATG AGTTTTGCTG GCTATGCCTT
GGTGTATGGT CAGACCACGG TGAAAGAACT GGGGGTTTTT ATGCTTGCAA TCGCTATGAA ACAGCTAAAC AAGAAGGAGT
GTATGATGAT ACTGAAAGAA GAAGGGAAAT GGCAAAGAAT TCACTGGAGA GATACACACA TTATTATGAG CGGTGGGCCA
GCAATCAATC TTCAAGGCAA AAAGCTCTTG CAGATCTGCA GCAGATGCAA ACTGTTCATA TTGAGAAGCT TAGTGACATA
CAGTGTCAGC CTGAGTCACA GCTTAAGTTT ATTACGGAGG CCTGGCTACA AATAATTGAA TGTAGAAGAG TACTGAAATG
GACATACGCA TACGGGTTCT ACTTACCCGA GCATGAGCTT GCGAAAAAAC AGTTCTTTGA GTACTTACAA GGTGAAGCAG
AATCTGGCCT GGAGAGACTT CATCAATGTG CAGAAAAGGA ACTTCAGCCA TTCCTATGTG CTGATGAGCC ATCTAGAGAA
TTCAATGACT TTCGTACTAA ACTAGCTGGA TTGACTAGTG TGACTAGAAA CTACTTTGAG AATTTGGTAA GGGCGTTAGA
GAATGGTTTA TCTGACGTGG ATAGTAATGG AGCTTCCTTC AGCAGAGCAA CGAGCTCAAA AAATGCTGCT GGTAGCAGTA
AAGGGAGATC CGGAAGAGTA AAGGGAACTT TTCGAACCAG CATGTCCAGC AGAATGAATG ATGATAGTCA TTGGTGTTGC
GAGCATTGTA CCTATGCAAA TGTCAAATCT GCCACAACAT GCCAGATGTG CTATCAACAG CGTAGATGAA AAATCCGTTC
AACATTTCAA ACATTTGTGT CCTGCCCAAT ACCTTTTCGC CAGAAGCTTT GATGGAGTTA TTCCTCAATT TGTCTTAACA
TATGCGGTCT CTCCGTTTTA TGAGGCTCTT TAACTATGTG AACAGGATGA AATGAGTTAG GCAGAAGAAA AATTACCCTC
CTATTCAATA CAGCCCCAAT TTGATGTATA TAATGTTCTA TCTTATTTAC TTAACGAGGT TTTCTACTAC AGCCATTTGT
AACTGAACAT CGTAACACAT GCTGGAGATG AACACAAATA TGTTTGTTTG TGCCCACCCT TTCAGGTGGT CTCTTGGCAG
CTTCCAAGAT ACCTAGGGTT AGTCATGTGT AATAAGCTGA GTTTGATAAC ATTCTAAGAA ATGATCAGGG ACTACAATAA
ATGTTATACA GTATCACTTT AAATTTATGG CACCTTTGCG AACTCTTGTG GCTGTCATGT TTGATGTATG ATGTATATCC
AAACTAAGTC CGACCCAAAG TCGATGTGGT GCTACTGATG TTTGTATTCC CTTTTATGTA GGACGAGTAT AAAATGGTTA
ATAAAAACTG AATCGATTCG TTACTTCGAA 

>Vigan.06G211100.01
ATGCAGTCGG AGGATGACAT GCACGACGCC AACGACATCG ATTCCCTCGA CGACGATTTC TACAGCGGCG AAACCGAGGA
TGCGCCCTTG GACTACTACA GCGATTACGA CGATGAGGCC GATGATTACT TCGAAGAAGC TGACAGGATT GAGTCTCGTC
GTCCTGAGCA AAATTTTACC ATTTTGAAGG AATCCGACAT CAAACAAAGA CAGGAAGAAG ATGTCACTAG AGTAGCAACT
GTTCTTTCCA TATCAAGAAT TTTTGCAAGC ATACTACTTC GTTACTACAA TTGGAGTGTC AGTAGAGTGC ATGATGCATG
GTTTGCTGAT GAAGAACAAG TCAGAAAATC AGTTGGTTTG TTGGAGAAGC CAATTGTCCA GCATGATAAT AATACTAGAG
AGCTTACTTG CGGTATCTGT TTTGAAAATT ATCCTCGGGC TAGAATTGAA ATGGCTTCCT GTGGTCATCC CTACTGTATC
TCATGCTGGG AAGGCTATAT CAGCACATCC ATTAGTGATG GTCCCGGATG TTTGATGCTG AGATGTCCTG ATCCCACTTG
TGGTGCTGCT GTCGGTCAAG ATATGATTAG TCTTCTAAAA TCTGATGAAG ATAAGCAGAA ATATGCACGT TATCTTCTTA
GGTCATACAT TGAAGACAAT AAGAAGTCCA AGTGGTGTCC TGCTCCAGGT TGTGAATGTG CTGTCACTTT TGATGCTGTT
AGTGTTGGGA ATTACGATGT CTCTTGCCTC TGTTCATATA GTTTTTGTTG GAATTGCACT GAGGAGGCTC ATCGTCCAGT
AGACTGTGGG ACTGTGGCAA AGTGGATTTT GAAGAACAGT GCAGAATCTG AAAACATGAA TTGGATACTT GCTAATTCAA
AGCCATGTCC CAAGTGCAAG CGACCAATTG AAAAAAATCA AGGGTGCATG CACATGACTT GCACACCGCC CTGTAAATAT
GAGTTTTGCT GGCTATGCCT TGGTGTATGG TCAGACCACG GTGAAAGAAC TGGGGGTTTT TATGCTTGCA ATCGCTATGA
AACAGCTAAA CAAGAAGGAG TGTATGATGA TACTGAAAGA AGAAGGGAAA TGGCAAAGAA TTCACTGGAG AGATACACAC
ATTATTATGA GCGGTGGGCC AGCAATCAAT CTTCAAGGCA AAAAGCTCTT GCAGATCTGC AGCAGATGCA AACTGTTCAT
ATTGAGAAGC TTAGTGACAT ACAGTGTCAG CCTGAGTCAC AGCTTAAGTT TATTACGGAG GCCTGGCTAC AAATAATTGA
ATGTAGAAGA GTACTGAAAT GGACATACGC ATACGGGTTC TACTTACCCG AGCATGAGCT TGCGAAAAAA CAGTTCTTTG
AGTACTTACA AGGTGAAGCA GAATCTGGCC TGGAGAGACT TCATCAATGT GCAGAAAAGG AACTTCAGCC ATTCCTATGT
GCTGATGAGC CATCTAGAGA ATTCAATGAC TTTCGTACTA AACTAGCTGG ATTGACTAGT GTGACTAGAA ACTACTTTGA
GAATTTGGTA AGGGCGTTAG AGAATGGTTT ATCTGACGTG GATAGTAATG GAGCTTCCTT CAGCAGAGCA ACGAGCTCAA
AAAATGCTGC TGGTAGCAGT AAAGGGAGAT CCGGAAGAGT AAAGGGAACT TTTCGAACCA GCATGTCCAG CAGAATGAAT
GATGATAGTC ATTGGTGTTG CGAGCATTGT ACCTATGCAA ATGTCAAATC TGCCACAACA TGCCAGATGT GCTATCAACA
GCGTAGATGA 

>Vigan.06G211100.01
MQSEDDMHDA NDIDSLDDDF YSGETEDAPL DYYSDYDDEA DDYFEEADRI ESRRPEQNFT ILKESDIKQR QEEDVTRVAT
VLSISRIFAS ILLRYYNWSV SRVHDAWFAD EEQVRKSVGL LEKPIVQHDN NTRELTCGIC FENYPRARIE MASCGHPYCI
SCWEGYISTS ISDGPGCLML RCPDPTCGAA VGQDMISLLK SDEDKQKYAR YLLRSYIEDN KKSKWCPAPG CECAVTFDAV
SVGNYDVSCL CSYSFCWNCT EEAHRPVDCG TVAKWILKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM HMTCTPPCKY
EFCWLCLGVW SDHGERTGGF YACNRYETAK QEGVYDDTER RREMAKNSLE RYTHYYERWA SNQSSRQKAL ADLQQMQTVH
IEKLSDIQCQ PESQLKFITE AWLQIIECRR VLKWTYAYGF YLPEHELAKK QFFEYLQGEA ESGLERLHQC AEKELQPFLC
ADEPSREFND FRTKLAGLTS VTRNYFENLV RALENGLSDV DSNGASFSRA TSSKNAAGSS KGRSGRVKGT FRTSMSSRMN
DDSHWCCEHC TYANVKSATT CQMCYQQRR*