GBrowse Details

Vigan.06G211400.01

Basic Information:
Name: Vigan.06G211400.01
Multiple alignment
Variant Information
Position: Chr06:34555792..34558751 (- strand)
Length: 2960
Functional Information:
Description: Similar to Gamma-secretase subunit APH1. [U5TZI6, Phaseolus vulgaris]
GO: Biological Process: protein processing (GO:0016485)
Biological Process: positive regulation of catalytic activity (GO:0043085)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Gamma-secretase subunit Aph-1 (IPR009294)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:69.34,48.84,15.23,13.06,16.88,37.59,25.26,14.52
Arabidopsis thaliana homolog: AT2G31440.1
Automatic updates:
Name: NM_001254998 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gamma-secretase subunit APH1-like (LOC100794637), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:34555792..34556084 (- strand)
Length: 293
Type: three_prime_UTR
Position: Chr06:34556085..34556225 (- strand)
Length: 141
Type: CDS
Position: Chr06:34556494..34556621 (- strand)
Length: 128
Type: CDS
Position: Chr06:34556927..34557052 (- strand)
Length: 126
Type: CDS
Position: Chr06:34557335..34557420 (- strand)
Length: 86
Type: CDS
Position: Chr06:34557950..34558105 (- strand)
Length: 156
Type: CDS
Position: Chr06:34558320..34558432 (- strand)
Length: 113
Type: CDS
Position: Chr06:34558433..34558751 (- strand)
Length: 319
Type: five_prime_UTR


>Vigan.06G211400.01
TTTTTTCCTT CCTTTCTTTC TCTCTCAACC ACCAACCAAA TCAAAACAAA ACAAGTGAAT AATACCTGTC CTATACCTGA
CAGAATTAAT TATGGCTTCT ACATGAAGTA GATGCTATTA TGGGCTTTTT TGTTCTTGAT TTAGCCCAGA TATATACTTA
GTCAGGCCCA ACAGTGAAAT GTGCCTTGGT AACCGACCCG AATAGCGATT CGGATCAGAA GATGAGTGAC TCGGTGTTCA
TTGAGTGGAG GAGCTGAGCA GAGGAGTTCG GGAAGTGTTT GGTGACTTCT CAGATTCTGT TCCTTTGAGA GAGAGAGAGA
TGACGGTAGC AGCAGGAATC GGTTACGCTC TGGTAGCGTT AGGGCCCTCT CTCTCCCTCT TCATTTCCGT CATTTCCAAA
AAGCCCTTCC TCATTCTCAC TGTTCTCTCC AGTACACTGT TGTGGCTTAT TAGTTTGATT GTGCTGTCTG GAATATGGAG
GGGTTTTTTG CCCCTCAATA CAACCGCTTG GTGGCCTTTT GGAATTCTTA TATTCTCATC TGTTGCTTTT CAAGAAGCTC
TTAGGCTGTT CTTCTGGAAA ATATACAAGA GGTTAGAAGA CATGTTAGAT GCCTTTGCTG ACAGAGTATC AAAACCCCAT
CTTCTCCTGA CAGATAAGAT GTTGATTGCT CTGGCTGGTG GGTTGGGCCA TGGTGTTGCC CATGCTGTGT TCTTCTGCAT
CAGCCTATTA ACTCCTGCAT TTGGTCCAGC AACATATTTT GTTGACAGGT GTTCAAAAGT TCCATTTTTC CTTCTTTATG
CAACTATTGC TCTTGCATTT GTCACAATCC ACACATTCTC AATGGTCATC GCATTTAATG GATACACAGA GGGGAACAAA
GTGGATACAT ATTTTGTTCC CATTGTTCAC ATTGTTGCAG GAATGGTGAC ACTGGTGAAT TTGGCGCCTG GTGGTTGCGC
TGTTGGCATT CCTCTTCTTT ATTTCACTGC TATCTTGACC TTGGTTCATT GTGGGAGGAT GGTTTGGAGA AGATTGACAG
AAAACCCAAT CAGGCCAGGT CACTCATAGT AATTGATGGT TTTTGTAAAA AGTCTCCCTA TAGTTGCTTA TTGCTCACTA
TACCTGTTTA AATACGTAAG ATAGCAGAAG TTATATTGCA CAAAAGGTGT TTCCTTGACT TGATGCTCCC ATCTTCTTAC
AATATGCGGG GCTCAAAGTC ACCTTTCTTT CATATTTGAC AGTTTTACTT ATCGTCATTG TAATTAGGTT CATTCAAGTT
TTGGTTGCAG AAGCCAGTTT GTTGAAGTAT TGGTCGTTTA GTATCTATAA AATGAAAGTC TACCAGATTA AGAACATGTG
TG

>Vigan.06G211400.01
ATGACGGTAG CAGCAGGAAT CGGTTACGCT CTGGTAGCGT TAGGGCCCTC TCTCTCCCTC TTCATTTCCG TCATTTCCAA
AAAGCCCTTC CTCATTCTCA CTGTTCTCTC CAGTACACTG TTGTGGCTTA TTAGTTTGAT TGTGCTGTCT GGAATATGGA
GGGGTTTTTT GCCCCTCAAT ACAACCGCTT GGTGGCCTTT TGGAATTCTT ATATTCTCAT CTGTTGCTTT TCAAGAAGCT
CTTAGGCTGT TCTTCTGGAA AATATACAAG AGGTTAGAAG ACATGTTAGA TGCCTTTGCT GACAGAGTAT CAAAACCCCA
TCTTCTCCTG ACAGATAAGA TGTTGATTGC TCTGGCTGGT GGGTTGGGCC ATGGTGTTGC CCATGCTGTG TTCTTCTGCA
TCAGCCTATT AACTCCTGCA TTTGGTCCAG CAACATATTT TGTTGACAGG TGTTCAAAAG TTCCATTTTT CCTTCTTTAT
GCAACTATTG CTCTTGCATT TGTCACAATC CACACATTCT CAATGGTCAT CGCATTTAAT GGATACACAG AGGGGAACAA
AGTGGATACA TATTTTGTTC CCATTGTTCA CATTGTTGCA GGAATGGTGA CACTGGTGAA TTTGGCGCCT GGTGGTTGCG
CTGTTGGCAT TCCTCTTCTT TATTTCACTG CTATCTTGAC CTTGGTTCAT TGTGGGAGGA TGGTTTGGAG AAGATTGACA
GAAAACCCAA TCAGGCCAGG TCACTCATAG 

>Vigan.06G211400.01
MTVAAGIGYA LVALGPSLSL FISVISKKPF LILTVLSSTL LWLISLIVLS GIWRGFLPLN TTAWWPFGIL IFSSVAFQEA
LRLFFWKIYK RLEDMLDAFA DRVSKPHLLL TDKMLIALAG GLGHGVAHAV FFCISLLTPA FGPATYFVDR CSKVPFFLLY
ATIALAFVTI HTFSMVIAFN GYTEGNKVDT YFVPIVHIVA GMVTLVNLAP GGCAVGIPLL YFTAILTLVH CGRMVWRRLT
ENPIRPGHS*