GBrowse Details

Vigan.06G217600.01

Basic Information:
Name: Vigan.06G217600.01
Multiple alignment
Variant Information
Position: Chr06:35004105..35007421 (+ strand)
Length: 3317
Functional Information:
Description: Similar to Uncharacterized protein. [I1LJI7, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.26,3.71,2.66,4.50,0.03,0.30,0.17,3.50
Automatic updates:
Name: NM_001252776 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CASP-like protein At1g49405-like (LOC100791311), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:35004105..35005362 (+ strand)
Length: 1258
Type: five_prime_UTR
Position: Chr06:35005363..35005493 (+ strand)
Length: 131
Type: CDS
Position: Chr06:35006504..35006636 (+ strand)
Length: 133
Type: CDS
Position: Chr06:35006728..35006922 (+ strand)
Length: 195
Type: CDS
Position: Chr06:35006923..35007421 (+ strand)
Length: 499
Type: three_prime_UTR


>Vigan.06G217600.01
TGGTAGATAT AATTATAGAT GTTTACATGA CGTGAAGGGT AGATAAATAG TTGACGGTTG AACTTGTGTG AGAGATGGAA
CGTTCTTGTT TTCACTGTAG AGGTTCCAAC ATTCAACCAA ATCAAAATGA AAGTAACTCA GTTGCAGTTA AGAGAAATTT
GAAGGCTCAA GTCTCCTTGC CCATATTGAG ATGTTGCACA GTTTTGTACC CTTTTGTTCA TCACCTAAAA AATAAAGTTT
CAGAAGTTAT GAAGCTAAAG TGAGACTAAA GAGAGTGAGT TGATCAGAAA AAGGTGCAGA ATTGAGTGTC CTTATAGGTT
TTTGTCCCAT CATTCTAAGT TACTCCACTA GCACTTGCAT CACATGATAA CATCATTTTC CAATGAAAAT GGGGTCAATA
CTAGTTTGAC AATTGGCGAA TCTGAGTTCC CTCTTTAGAA AGCACTGGCA CACAACCTGC CGCTAGTCAT TCCATTCATA
AATTCATTTT GGACACAGAT GCATCTCTTG TCTTGTCTGG TCCCTATTAA GAAAGAGTAA CGACCGTTCA AAACCATACA
AAATAATATA ACAAAATTTC CCAATGGAAA AAAGAACCAA ATCTTTAAGC AAAAAAACGC ATCTTTTGAT AACCCTTTTG
AATGTATCTC AAAATATTTT ACACTCTTCT TTCCATCATG ATGAGGTCAG AGTGGAGAAG GCAAAAACGT TTCTGTTCTG
CTATAAACAG AAGAGTTAGA ACTCATCCCA TTTGAAGTCC TGTCAAAGGA GCCTCAAATA TTTAGCGGCA CCGAATGGCG
AAGTAGCCCA TGTGTCAACA CCATCATCTT AATTAAAACA ACAGCATTAT TGTTCAATCA GCAGACAGAA AAAGTCTATG
CACATAGTCC AAACTTGCAC CTAACATAAA CTTGCCTAAA TTCTATCTTG AAGTTTCTAT TTGGAAGAGA AAGGTTTTCG
TTGTCATAAA GGGCAACCCA CGTGCTTATT ACATATTGGA TTTTCTTTCT TTTCTTCCTT GGCTTGTTTC AATCTCTACA
CAAGGGGAGA TAAGGGGCCA AGAATTTCAT ACAAGCTTGG GAGTTCTTAT CTACTTTAGA GAATGTTTTT GTACCACTAG
ATGGTTTCAG CTGAAAGAAG TAAACAATGA TCACAAGACG AGTTTGGTAT GATCTTGAAG AACAAATATG ATAGAAGAAT
ATCGCAAGGA AAGAGGAAAG TCCATAAATA GATTTTGTAC ATCCCATGTA CTGAGTTAAT GGATGAAGTA CCTGGCTCCT
TGGGCACAAC CGCTAGCTTC AGTCTGAGAA TGGGCCAGAC CATGTTCTCA TCTGCTTCCC TTCTCTTCAT GTCTTTTGGG
GTTGAATTCT ACAGCTACAC GGCTTTCTGC TATTTGGTTA CAATTATGGG GTTGGTCATA CCGTGGAGTT TCACATTAGC
ACTAGTAGAT GGATATTCGA TTCTGCTCAA ATGCCCCATT CGTCAACCAG GAATTCTGCT GATTATTGTT GTGGGAGATT
GGGTACTATC AACCCTCACA CTAGCAGCAG CTTCCTCAAC AGCTAGTGTT GTGGATCTTC TGCTCAACAC TCACGGCTCT
TTTTGCCCTC CAAAGCTCTG CAGCAGGTAC AGGATATCTG CAATTATGGC CTTCTTGTCA TGGTTTCTAT CTTTGGCATC
CTCTCTATTT AACCTTTGGC TATTACCCTC TTTGTGATTC TCATTTACTT CCCCTGTAGA ATCATTAGAT TAATCATTAT
TTGTAATGCA ATTTCCTCTG TCATGTAAAA TACCCGGTGC AGGATTTTAA ATGATGTATA TTTATAACTA CAAAAGTTTG
TTTGGAGAAG TTCCATAGAA GCTAAATGTT AAACTTTACA CAGGAGCAAA GTACCCCTTG AGTCCAATGA ATCTCACGCT
CAACTTCATA GCAGATACAA GATTGTAAAA TACTAACATG TAAAGATGGC ACACTGCAGT TCTGCTGTTT GGTAATTCCC
TTCCCCGTAC AGGAGTTGAA CACTTATCAT GTATTTCACC ATCAACACTT GCCCCCGAGT CCTCTGGTGG CCTTGTTGAG
AATTTGCGGT GATATACAGA ACCAACAAAC AAAATAAACA GTTAAATTTT CGAAGTACAG CTTCATCCTG AACTGAAACC
AGATCACAAA TATGGCCTTT CTTCTTCATT ACTTTTATAA AAACACCAAA GCAAGC

>Vigan.06G217600.01
ATGGATGAAG TACCTGGCTC CTTGGGCACA ACCGCTAGCT TCAGTCTGAG AATGGGCCAG ACCATGTTCT CATCTGCTTC
CCTTCTCTTC ATGTCTTTTG GGGTTGAATT CTACAGCTAC ACGGCTTTCT GCTATTTGGT TACAATTATG GGGTTGGTCA
TACCGTGGAG TTTCACATTA GCACTAGTAG ATGGATATTC GATTCTGCTC AAATGCCCCA TTCGTCAACC AGGAATTCTG
CTGATTATTG TTGTGGGAGA TTGGGTACTA TCAACCCTCA CACTAGCAGC AGCTTCCTCA ACAGCTAGTG TTGTGGATCT
TCTGCTCAAC ACTCACGGCT CTTTTTGCCC TCCAAAGCTC TGCAGCAGGT ACAGGATATC TGCAATTATG GCCTTCTTGT
CATGGTTTCT ATCTTTGGCA TCCTCTCTAT TTAACCTTTG GCTATTACCC TCTTTGTGA

>Vigan.06G217600.01
MDEVPGSLGT TASFSLRMGQ TMFSSASLLF MSFGVEFYSY TAFCYLVTIM GLVIPWSFTL ALVDGYSILL KCPIRQPGIL
LIIVVGDWVL STLTLAAASS TASVVDLLLN THGSFCPPKL CSRYRISAIM AFLSWFLSLA SSLFNLWLLP SL*