VIGGS:GBrowse

Vigan.06G220400.01

Basic Information:

Name:	Vigan.06G220400.01 Multiple alignment Variant Information
Position:	Chr06:35202430..35204871 (+ strand)
Length:	2442

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LQ52, Glycine max]
GO:	Biological Process: transport (GO:0006810)
	Biological Process: transmembrane transport (GO:0055085)
	Cellular Component: membrane (GO:0016020)
	Cellular Component: integral to membrane (GO:0016021)
	Molecular Function: transporter activity (GO:0005215)
	Molecular Function: transmembrane transporter activity (GO:0022857)
	Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891)
InterPro:	Sugar/inositol transporter (IPR003663)
	General substrate transporter (IPR005828)
	Sugar transporter, conserved site (IPR005829)
	Major facilitator superfamily domain, general substrate transporter (IPR016196)
	Major facilitator superfamily domain (IPR020846)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:115.38,145.70,63.55,196.48,58.99,27.89,25.93,48.38
Arabidopsis thaliana homolog:	AT2G16120.1, AT2G16130.1, AT2G18480.1, AT3G18830.1, AT4G36670.1

Automatic updates:

Name:	NM_001249663 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max sorbitol-like transporter (STP), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:35202430..35202702 (+ strand)
Length:	273
Type:	five_prime_UTR

Position:	Chr06:35202703..35202835 (+ strand)
Length:	133
Type:	CDS

Position:	Chr06:35203202..35203548 (+ strand)
Length:	347
Type:	CDS

Position:	Chr06:35203631..35204719 (+ strand)
Length:	1089
Type:	CDS

Position:	Chr06:35204720..35204871 (+ strand)
Length:	152
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G220400.01
AAAATATATG GCAGACACAG TGGCAACGAT TTCTTTCTTT ATCTTAGAGA GAGAGAGTGT TGGGAATACA TCTTCCTACC
ATGTGAGACT CTTTAGTCTA TGGTGACGAA TGCATCTCAA TGCCAATTTC TTCTATTTAA GCATTCTCCC ACAACCTTAC
ACTCCTAAAT TAAATACATC TTACCAATTT AGCACGCTTT TCTCTCTATA ATCTCTCTCT CTTCCTCTCA GATTTTCCCT
CTTCCAGATA TCCACTTCAA CTGAGTCAAC AGCATGACTG AAGGAAAGGG AGTTGAAGCT AGGAAAATTG TGGGGGATTT
CAATCCTTCC AAGAAGCCCA AAAGCAACAA GTATGCTTTT GGTTGCGCTA TTTTGGCCTC CATGACATCC ATTTTACTTG
GCTATGATAT CGGGGTGATG AGTGGTGCAG CCATATACAT AAAGAGGGAC CTAAAGGTGT CGGACGTGCA AATCGAGATA
CTGATGGGAA TCATCAATCT CTACTCTCTC ATAGGCTCAT GCTTGGCCGG CCGAACCTCC GACTGGATAG GCCGCCGATA
CACCATTGTC TTCGCCGGCA CCATCTTCTT CGTCGGGGCA ATTCTCATGG GTTTCTCTCC CAACTATGCC TTTCTCATGT
TCGGCCGTTT CGTGGCCGGC ATCGGCATCG GCTACGCCCT CATGATCGCC CCTGTCTACA CCGCCGAAGT CTCTCCCGCC
TCAACCCGTG GCTTCCTCAC TTCCTTTCCC GAGGTTTTTA TTAATGGAGG GATATTACTG GGATACATAT CCAACTATGC
ATTTTCAAAG TTGTCATTGA AGTTGGGATG GCGAATGATG CTTGGGGTCG GTGTGTTTCC CTCGATACTC CTGACATTGG
GAGTGTTGGC GATGCCGGAA TCCCCGCGGT GGCTGGTGAT GAGGGGACGT TTGGGAGAGG CAACGAAAGT GCTTAACAAA
ACCTCCGACA GCAAGGAAGA AGCTCAACTG AGGCTGGCCG AGATCAAGCA AGCCGCAGGG ATACCAGAGA GTTGCAACGA
CGACGTCGTT CAGGTAACGG AAAAAAACAC CGGCGAGGGC GTGTGGAAAG AGTTGTTCCT CCATCCAACG CCTGCGATTC
GTCACATCGT AATTGCGGCG CTGGGGATTC ACTTCTTCCA ACAAGCGTCG GGTGTGGACG CCGTCGTTTT ATACAGTCCG
AGAATCTTCG AGAAGGCTGG GATCACTGAT GACACACAGA AGCTTCTGGC AACGGTGGCC GTTGGATTCG TGAAGACGTT
GTTCATCTTG GTTGCTACTT TCATGTTGGA CCGGGTGGGT CGTCGTCCCC TGTTATTGTC TAGTGTGGGG GGCATGGTGC
TCTCGCTTCT GACTCTGGCA ATCAGCCTTA CGATCATCGA TCAGTCGAAC AGTAAACTGA TGTGGGCCAT TGGATTGAGT
ATAACGATGG TGTTAACCTA CGTGGCGACG TTTTCCATCG GTTCGGGACC CATCACGTGG GTGTACAGCT CTGAGATCTT
TCCGTTGAGG TTGCGGGCGC AGGGTGCGGC TGCGGGTGTG GTGGTGAACA GAACGACAAG TGGCGTTATT TCAATGACTT
TTTTGTCCCT GACTAAAGCC ATCACTATTG GCGGAGCTTT CTTCCTGTAT TTTGGCATTG CTGCAGTTGG GTGGTTATTC
TTCTACACCG TGCTTCCTGA GACACGGGGT AAAACACTTG AAGACATGGA AGGTTCTTTT GGTACTTTCA GAGCCAAATC
CAACAACACC AACAACAATG GAATAGAAAA TGGAAATTCC AAAGTGCCAC AACTTCAGAT GGGGACCAAT CTCCAGCCGT
AGACAATATT AGGGCATCGT GTAATAATCT AGTGCTTGTG TTTTTCTAAA AACAGTAGTT TTTTAAATCA AAAATCATAT
TCCAAAGAGA CTTGTGTATG AAAATAAAAA TACAATAACT TTGATGAATC ACAATTAAAA ATAAATTATG GGCT

[show][hide][copy]CDS

>Vigan.06G220400.01
ATGACTGAAG GAAAGGGAGT TGAAGCTAGG AAAATTGTGG GGGATTTCAA TCCTTCCAAG AAGCCCAAAA GCAACAAGTA
TGCTTTTGGT TGCGCTATTT TGGCCTCCAT GACATCCATT TTACTTGGCT ATGATATCGG GGTGATGAGT GGTGCAGCCA
TATACATAAA GAGGGACCTA AAGGTGTCGG ACGTGCAAAT CGAGATACTG ATGGGAATCA TCAATCTCTA CTCTCTCATA
GGCTCATGCT TGGCCGGCCG AACCTCCGAC TGGATAGGCC GCCGATACAC CATTGTCTTC GCCGGCACCA TCTTCTTCGT
CGGGGCAATT CTCATGGGTT TCTCTCCCAA CTATGCCTTT CTCATGTTCG GCCGTTTCGT GGCCGGCATC GGCATCGGCT
ACGCCCTCAT GATCGCCCCT GTCTACACCG CCGAAGTCTC TCCCGCCTCA ACCCGTGGCT TCCTCACTTC CTTTCCCGAG
GTTTTTATTA ATGGAGGGAT ATTACTGGGA TACATATCCA ACTATGCATT TTCAAAGTTG TCATTGAAGT TGGGATGGCG
AATGATGCTT GGGGTCGGTG TGTTTCCCTC GATACTCCTG ACATTGGGAG TGTTGGCGAT GCCGGAATCC CCGCGGTGGC
TGGTGATGAG GGGACGTTTG GGAGAGGCAA CGAAAGTGCT TAACAAAACC TCCGACAGCA AGGAAGAAGC TCAACTGAGG
CTGGCCGAGA TCAAGCAAGC CGCAGGGATA CCAGAGAGTT GCAACGACGA CGTCGTTCAG GTAACGGAAA AAAACACCGG
CGAGGGCGTG TGGAAAGAGT TGTTCCTCCA TCCAACGCCT GCGATTCGTC ACATCGTAAT TGCGGCGCTG GGGATTCACT
TCTTCCAACA AGCGTCGGGT GTGGACGCCG TCGTTTTATA CAGTCCGAGA ATCTTCGAGA AGGCTGGGAT CACTGATGAC
ACACAGAAGC TTCTGGCAAC GGTGGCCGTT GGATTCGTGA AGACGTTGTT CATCTTGGTT GCTACTTTCA TGTTGGACCG
GGTGGGTCGT CGTCCCCTGT TATTGTCTAG TGTGGGGGGC ATGGTGCTCT CGCTTCTGAC TCTGGCAATC AGCCTTACGA
TCATCGATCA GTCGAACAGT AAACTGATGT GGGCCATTGG ATTGAGTATA ACGATGGTGT TAACCTACGT GGCGACGTTT
TCCATCGGTT CGGGACCCAT CACGTGGGTG TACAGCTCTG AGATCTTTCC GTTGAGGTTG CGGGCGCAGG GTGCGGCTGC
GGGTGTGGTG GTGAACAGAA CGACAAGTGG CGTTATTTCA ATGACTTTTT TGTCCCTGAC TAAAGCCATC ACTATTGGCG
GAGCTTTCTT CCTGTATTTT GGCATTGCTG CAGTTGGGTG GTTATTCTTC TACACCGTGC TTCCTGAGAC ACGGGGTAAA
ACACTTGAAG ACATGGAAGG TTCTTTTGGT ACTTTCAGAG CCAAATCCAA CAACACCAAC AACAATGGAA TAGAAAATGG
AAATTCCAAA GTGCCACAAC TTCAGATGGG GACCAATCTC CAGCCGTAG

[show][hide][copy]PROTEIN

>Vigan.06G220400.01
MTEGKGVEAR KIVGDFNPSK KPKSNKYAFG CAILASMTSI LLGYDIGVMS GAAIYIKRDL KVSDVQIEIL MGIINLYSLI
GSCLAGRTSD WIGRRYTIVF AGTIFFVGAI LMGFSPNYAF LMFGRFVAGI GIGYALMIAP VYTAEVSPAS TRGFLTSFPE
VFINGGILLG YISNYAFSKL SLKLGWRMML GVGVFPSILL TLGVLAMPES PRWLVMRGRL GEATKVLNKT SDSKEEAQLR
LAEIKQAAGI PESCNDDVVQ VTEKNTGEGV WKELFLHPTP AIRHIVIAAL GIHFFQQASG VDAVVLYSPR IFEKAGITDD
TQKLLATVAV GFVKTLFILV ATFMLDRVGR RPLLLSSVGG MVLSLLTLAI SLTIIDQSNS KLMWAIGLSI TMVLTYVATF
SIGSGPITWV YSSEIFPLRL RAQGAAAGVV VNRTTSGVIS MTFLSLTKAI TIGGAFFLYF GIAAVGWLFF YTVLPETRGK
TLEDMEGSFG TFRAKSNNTN NNGIENGNSK VPQLQMGTNL QP*