VIGGS:GBrowse

Vigan.06G221200.01

Basic Information:

Name:	Vigan.06G221200.01 Multiple alignment Variant Information
Position:	Chr06:35272358..35275970 (- strand)
Length:	3613

Functional Information:

Description:	Similar to ras-related protein Rab7 isoformX1. [XP_003537879.1, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:331.19,119.59,84.36,98.69,124.89,88.18,82.72,85.56
Arabidopsis thaliana homolog:	AT3G18820.1

Automatic updates:

Name:	NM_001251489 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305642 (LOC100305642), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:35272358..35272832 (- strand)
Length:	475
Type:	three_prime_UTR

Position:	Chr06:35272833..35272899 (- strand)
Length:	67
Type:	CDS

Position:	Chr06:35273469..35273614 (- strand)
Length:	146
Type:	CDS

Position:	Chr06:35273754..35273834 (- strand)
Length:	81
Type:	CDS

Position:	Chr06:35273939..35274085 (- strand)
Length:	147
Type:	CDS

Position:	Chr06:35275136..35275235 (- strand)
Length:	100
Type:	CDS

Position:	Chr06:35275364..35275390 (- strand)
Length:	27
Type:	CDS

Position:	Chr06:35275713..35275765 (- strand)
Length:	53
Type:	CDS

Position:	Chr06:35275766..35275970 (- strand)
Length:	205
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G221200.01
GCTGTCAGCG AGGGAATATT CGCGAAGAGA GAGAAGAAGG CGTTTGCAAT ATTGAGTAGA GAGAGACGAT AGAGAAGTTG
AGTTTGGAGG TGCAGGAGAG ACAGAGAGAG AGAGAGATCG TAGCGCATCG CAACGACTCA GTCAAACACT CTGTAACACT
TTATTTCAAT TCTTACTTTC TCCGATCGCA TCGCTCGCCA CCGCCATGCC TTCCCGAAGA AGAACTCTCC TGAAGGTCAT
CATTCTCGGT GACAGTGGGG TGGGGAAGAC GTCTTTGATG AACCAATATG TGAATAAGAA GTTTAGTAAT CAGTACAAGG
CAACCATTGG AGCGGATTTT TTGACAAAAG AAGTGCAATT CGAAGATAGG CTTTTCACCT TACAGATTTG GGATACAGCT
GGCCAAGAAA GATTCCAAAG CCTTGGAGTT GCTTTCTATC GAGGTGCTGA TTGTTGTGTT CTTGTATATG ATGTTAATTC
AATGAAATCA TTTGACAACC TTAACAACTG GAGGGAGGAA TTTCTGATTC AAGCAAGTCC TTCCGATCCC GAGAATTTTC
CTTTTGTTGT CATAGGAAAC AAAATAGATA TTGATGGTGG GAACAGCAGA GTGGTGTCAG AAAAGAAGGC TCGGGCTTGG
TGTGCATCAA AAGGAAATAT TCCATATTTT GAGACATCTG CCAAAGAAGG CATTAATGTT GAAGAAGCAT TCCAATGCAT
AGCAAAGAAT GCCCTGAAAA GTGGAGAAGA AGAAGAATTA TACCTGCCAG ACACAATTGA TGTTGGAAAC AGCAGTCAGC
CACGGGCAAC AGGGTGCGAG TGCTGAATAT ATAGGTTTTC TTTTCAAAAC AAATAAAGTA CATTACTTCA AAATGATTTC
ACTGTGTTTA GTCATTGCTG TCTATGAAGA GGCGTCATTG TACATTAGTG TTTGCTCAAG AAACAAATTT ATCCAATGCT
ATATTTGGTA CTTGTTTGGT ATGTTATATA ATTGATCATA TTAGTTCTAC ATGTATGCTA TTCCGATATT GTAAAAGAAA
ACTGCTTAAG ATCTTTTTGA AGTTATGTAT TGCATTCCTC ATTGTTCGTA CTCAACATAG GCAGTATTTT GTACGACTGT
TTTCGTTATT CCACAAATTT GTGAACAATG ATTGATTGTC GTGGTCATGA TTCGAGCTTT TGTTGATGGA CCAACCTCAC
AACGCAGTGG TTTGCTGGGA TTCAGATGTT GCTGGGTAAA TCTCTCGAGG TATTGAAACC TTAAGATATG GTGATTTCCT
AAACAGGAAA TGGAAGCTAC A

[show][hide][copy]CDS

>Vigan.06G221200.01
ATGCCTTCCC GAAGAAGAAC TCTCCTGAAG GTCATCATTC TCGGTGACAG TGGGGTGGGG AAGACGTCTT TGATGAACCA
ATATGTGAAT AAGAAGTTTA GTAATCAGTA CAAGGCAACC ATTGGAGCGG ATTTTTTGAC AAAAGAAGTG CAATTCGAAG
ATAGGCTTTT CACCTTACAG ATTTGGGATA CAGCTGGCCA AGAAAGATTC CAAAGCCTTG GAGTTGCTTT CTATCGAGGT
GCTGATTGTT GTGTTCTTGT ATATGATGTT AATTCAATGA AATCATTTGA CAACCTTAAC AACTGGAGGG AGGAATTTCT
GATTCAAGCA AGTCCTTCCG ATCCCGAGAA TTTTCCTTTT GTTGTCATAG GAAACAAAAT AGATATTGAT GGTGGGAACA
GCAGAGTGGT GTCAGAAAAG AAGGCTCGGG CTTGGTGTGC ATCAAAAGGA AATATTCCAT ATTTTGAGAC ATCTGCCAAA
GAAGGCATTA ATGTTGAAGA AGCATTCCAA TGCATAGCAA AGAATGCCCT GAAAAGTGGA GAAGAAGAAG AATTATACCT
GCCAGACACA ATTGATGTTG GAAACAGCAG TCAGCCACGG GCAACAGGGT GCGAGTGCTG A

[show][hide][copy]PROTEIN

>Vigan.06G221200.01
MPSRRRTLLK VIILGDSGVG KTSLMNQYVN KKFSNQYKAT IGADFLTKEV QFEDRLFTLQ IWDTAGQERF QSLGVAFYRG
ADCCVLVYDV NSMKSFDNLN NWREEFLIQA SPSDPENFPF VVIGNKIDID GGNSRVVSEK KARAWCASKG NIPYFETSAK
EGINVEEAFQ CIAKNALKSG EEEELYLPDT IDVGNSSQPR ATGCEC*