VIGGS:GBrowse

Vigan.06G221400.01

Basic Information:

Name:	Vigan.06G221400.01 Multiple alignment Variant Information
Position:	Chr06:35291255..35295610 (- strand)
Length:	4356

Functional Information:

Description:	Similar to G protein beta subunit. [U5U079, Phaseolus vulgaris]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	G-protein, beta subunit (IPR001632)
	WD40 repeat (IPR001680)
	WD40/YVTN repeat-like-containing domain (IPR015943)
	Guanine nucleotide-binding protein, beta subunit (IPR016346)
	WD40-repeat-containing domain (IPR017986)
	WD40 repeat, conserved site (IPR019775)
	G-protein beta WD-40 repeat (IPR020472)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:91.66,43.37,39.91,45.97,41.17,76.94,65.60,40.56
Arabidopsis thaliana homolog:	AT4G34460.1

Automatic updates:

Name:	NM_001253962 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max guanine nucleotide-binding protein subunit beta-2-like (LOC100811645), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	PX766105 NCBI(nuccore)
Organism:	Medicago truncatula
Description:	Medicago truncatula cultivar R108 Gbeta1 mRNA, complete cds.
PubMed ID:	40641644 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:35291255..35291839 (- strand)
Length:	585
Type:	three_prime_UTR

Position:	Chr06:35291840..35291875 (- strand)
Length:	36
Type:	CDS

Position:	Chr06:35292369..35292482 (- strand)
Length:	114
Type:	CDS

Position:	Chr06:35292595..35292952 (- strand)
Length:	358
Type:	CDS

Position:	Chr06:35293929..35294353 (- strand)
Length:	425
Type:	CDS

Position:	Chr06:35295040..35295134 (- strand)
Length:	95
Type:	CDS

Position:	Chr06:35295280..35295385 (- strand)
Length:	106
Type:	CDS

Position:	Chr06:35295386..35295610 (- strand)
Length:	225
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G221400.01
AACAATATTC TGTCATTTCC ATTGTCTTCT TCTGTCTCTA TTTTGAAGGC TACCAAACAC TCCCTTAACT CCAACATCCT
CAACCCAACT TCATCTTACA AATAATTAAC CTTTCCCATT AATTTGTTGT AAAACTAAAA TAAAAAGCAT GTTCAGAAAC
ATGGTCTTCC CAACAACAAC CTCTTCCCTT CTTCCTTAAT TGGTGTGCTT ATTTAGGGAG TCCAAATGTC TGTTGCGGAG
CTCAAAGAGC GCCACTCCTC TGCCGTCGAC ACAGTCAACA ATCTCAGGCA CCAATTGAAG CAGAAGCGTC TTTCTTTGCT
CGACACAGAT ATCTGTGAGT ATGCGAGGTC TCAGGGTAGA ACACCTGTGA CCTTTGGACC TACGGATCTG GTTTGCTGTA
GAACCTTGCA GGGTCACACG GGAAAGGTGT ATTCGTTGGA TTGGACTTCT GAAAAAAGTC AGATTGTTAG TGCATCTCAA
GATGGACGAT TAATAGTGTG GAATGCCCTA ACTAGGCAGA AAATCCATGC CATAAAGCTG CCTTGTGCGT GGGTCATGAC
ATGTGCTTTT TCACCAACTG GTCAGTCTGT TGCATGTGGT GGTCTTGACA GTGTGTGTTC TATTTTCCAT CTTAATTCAC
CCACTGACAA AGATGGGAAT CTACCTGTTT CCCGGATGCT TAGTGGACAT AAGGGTTATG TTTCCTCTTG TCAGTATGTT
CCAGATGAAG ATACTCATTT AATTACTGGT TCTGGTGATC AGACATGTGT TTTATGGGAT ATAACTACTG GCCTTAAAAC
ATCTGTCTTT GGAGGGGAGT TCCAGTCTGG ACACACTGCA GATGTATACA GTATCTCCAT TAATGCATCC AACTCAAGAA
TGTTTGTATC CGGTTCTTGT GATGCAACTG CTCGATTGTG GGATACTCGC GTGGCAAGTC GAGCAGTGCG GACATTTCAT
GGGCATGAGG GAGATGTTAA TGCAGTTAAA TTCTTTCCGG ATGGAAATAG ATTTGGAACC GGCTCGGATG ATGGTACCTG
CAGATTGTTT GACATTAGGA CTGGACACCA ACTTCAAGTA TATTATCAGC AGCACAGTGA CAATGACATC CCGCCTGTGA
CTTCCATTGC ATTCTCTGCA TCAGGAAGAC TTCTTTTTGC TGGATACACA AATGGAGATT GCTATGTTTG GGACACTTTA
CTGGCAAAGG TGGTCTTGGA TTTAGGATCT CTTCAAGACT CTCATGACGA CAGGATCAGC TGTTTAGGTT TGTCAGCTGA
TGGGAGTGCT TTGTGTACAG GAAGTTGGGA CACAAACTTA AAGATATGGG CTTTTGGAGG GCATAGGAAG ACAACTTGAG
CATTGGGGGG ATGATAAAAT TGAAGATGAA GTGCGTGCTC TCACATAACC CTTCATTTTA GGCTTGCAAC TAGTGCAGCG
GTTTGTTTAT GCTCATATCT GTTTGTCCAC GTGTGATCTA AATAGTACTT TTTCCATTGT ACTACCCGCT TCGGTAACTA
TACCTTAAAC CAAAATGAAG GACTGTTTGT TTTCTGGTCT CAGCGTAGCA CGCCTATACA TACCGATTCC TCTTAATTAT
GATGATTGTG AGTATTCTAT TTAAAGGACC TGAAAGTGTC CCAAACTATA TTCAATCAAA TATTTTAGTT GTTTTAATGA
ATATAAATGG TATTTGTCCA GCAAAACCAT AATGTAGACT ACGACGAGGT ATCCCTCTTC AATTATTAGA TTGAGTAGTC
TGTCTCCTCA ATGGTGTTAT CCATTGAATG CAGTCGTTAA AACCTACTCA ATCGCTTATG CTGTAGCCAG AGAAAATTGT
AGAGCAAAAT ACGATGCTCG ATGCTCATAT AAGATGAAAC TTTTGTAACC AGTGATCTGT ATGCAAGTTT TGGTTTTATA
TGGGTGTGGG GATTAAAGTT GTAG

[show][hide][copy]CDS

>Vigan.06G221400.01
ATGTCTGTTG CGGAGCTCAA AGAGCGCCAC TCCTCTGCCG TCGACACAGT CAACAATCTC AGGCACCAAT TGAAGCAGAA
GCGTCTTTCT TTGCTCGACA CAGATATCTG TGAGTATGCG AGGTCTCAGG GTAGAACACC TGTGACCTTT GGACCTACGG
ATCTGGTTTG CTGTAGAACC TTGCAGGGTC ACACGGGAAA GGTGTATTCG TTGGATTGGA CTTCTGAAAA AAGTCAGATT
GTTAGTGCAT CTCAAGATGG ACGATTAATA GTGTGGAATG CCCTAACTAG GCAGAAAATC CATGCCATAA AGCTGCCTTG
TGCGTGGGTC ATGACATGTG CTTTTTCACC AACTGGTCAG TCTGTTGCAT GTGGTGGTCT TGACAGTGTG TGTTCTATTT
TCCATCTTAA TTCACCCACT GACAAAGATG GGAATCTACC TGTTTCCCGG ATGCTTAGTG GACATAAGGG TTATGTTTCC
TCTTGTCAGT ATGTTCCAGA TGAAGATACT CATTTAATTA CTGGTTCTGG TGATCAGACA TGTGTTTTAT GGGATATAAC
TACTGGCCTT AAAACATCTG TCTTTGGAGG GGAGTTCCAG TCTGGACACA CTGCAGATGT ATACAGTATC TCCATTAATG
CATCCAACTC AAGAATGTTT GTATCCGGTT CTTGTGATGC AACTGCTCGA TTGTGGGATA CTCGCGTGGC AAGTCGAGCA
GTGCGGACAT TTCATGGGCA TGAGGGAGAT GTTAATGCAG TTAAATTCTT TCCGGATGGA AATAGATTTG GAACCGGCTC
GGATGATGGT ACCTGCAGAT TGTTTGACAT TAGGACTGGA CACCAACTTC AAGTATATTA TCAGCAGCAC AGTGACAATG
ACATCCCGCC TGTGACTTCC ATTGCATTCT CTGCATCAGG AAGACTTCTT TTTGCTGGAT ACACAAATGG AGATTGCTAT
GTTTGGGACA CTTTACTGGC AAAGGTGGTC TTGGATTTAG GATCTCTTCA AGACTCTCAT GACGACAGGA TCAGCTGTTT
AGGTTTGTCA GCTGATGGGA GTGCTTTGTG TACAGGAAGT TGGGACACAA ACTTAAAGAT ATGGGCTTTT GGAGGGCATA
GGAAGACAAC TTGA

[show][hide][copy]PROTEIN

>Vigan.06G221400.01
MSVAELKERH SSAVDTVNNL RHQLKQKRLS LLDTDICEYA RSQGRTPVTF GPTDLVCCRT LQGHTGKVYS LDWTSEKSQI
VSASQDGRLI VWNALTRQKI HAIKLPCAWV MTCAFSPTGQ SVACGGLDSV CSIFHLNSPT DKDGNLPVSR MLSGHKGYVS
SCQYVPDEDT HLITGSGDQT CVLWDITTGL KTSVFGGEFQ SGHTADVYSI SINASNSRMF VSGSCDATAR LWDTRVASRA
VRTFHGHEGD VNAVKFFPDG NRFGTGSDDG TCRLFDIRTG HQLQVYYQQH SDNDIPPVTS IAFSASGRLL FAGYTNGDCY
VWDTLLAKVV LDLGSLQDSH DDRISCLGLS ADGSALCTGS WDTNLKIWAF GGHRKTT*