GBrowse Details

Vigan.06G227700.01

Basic Information:
Name: Vigan.06G227700.01
Multiple alignment
Variant Information
Position: Chr06:35777446..35785778 (- strand)
Length: 8333
Functional Information:
Description: Similar to MATE efflux family protein. [V7AG09, Phaseolus vulgaris]
GO: Biological Process: drug transmembrane transport (GO:0006855)
Biological Process: transmembrane transport (GO:0055085)
Cellular Component: membrane (GO:0016020)
Molecular Function: drug transmembrane transporter activity (GO:0015238)
Molecular Function: antiporter activity (GO:0015297)
InterPro: Multi antimicrobial extrusion protein (IPR002528)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.26,39.35,19.96,56.33,7.07,10.26,14.41,17.63
Arabidopsis thaliana homolog: AT2G21340.1, AT4G39030.1
Automatic updates:
Name: NM_001252998 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MATE efflux family protein 4, chloroplastic-like (EDS5), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:35777446..35777723 (- strand)
Length: 278
Type: three_prime_UTR
Position: Chr06:35777724..35777825 (- strand)
Length: 102
Type: CDS
Position: Chr06:35777911..35777970 (- strand)
Length: 60
Type: CDS
Position: Chr06:35778061..35778132 (- strand)
Length: 72
Type: CDS
Position: Chr06:35781299..35781376 (- strand)
Length: 78
Type: CDS
Position: Chr06:35782028..35782156 (- strand)
Length: 129
Type: CDS
Position: Chr06:35782259..35782369 (- strand)
Length: 111
Type: CDS
Position: Chr06:35782466..35782534 (- strand)
Length: 69
Type: CDS
Position: Chr06:35782615..35782752 (- strand)
Length: 138
Type: CDS
Position: Chr06:35782872..35783010 (- strand)
Length: 139
Type: CDS
Position: Chr06:35783454..35783509 (- strand)
Length: 56
Type: CDS
Position: Chr06:35783819..35783874 (- strand)
Length: 56
Type: CDS
Position: Chr06:35784006..35784114 (- strand)
Length: 109
Type: CDS
Position: Chr06:35785063..35785157 (- strand)
Length: 95
Type: CDS
Position: Chr06:35785257..35785677 (- strand)
Length: 421
Type: CDS
Position: Chr06:35785678..35785778 (- strand)
Length: 101
Type: five_prime_UTR


>Vigan.06G227700.01
GACAATCAGT TTGAAGTGTG GTGAGCCACT CAGCCTGCGG TGGGAGGGAA TACTCTGCTT CGTTTTCCTT CCCTCCACCA
AAGCAGTGCA GAAGGCAAGA AATGGCATTC AAACTCAAAT CACTACCTCT TCCTTACTCT CTTCACTCCT CTACCCGCCA
AAACCCGAAT TTCACGCTTT CGAACCATCG TCTTCCTCGT CGTTTCTCTG CACCTTCTCT TCCTCTCGGT ATCTCTCTCT
CAAGCACAGC TTCAGCATCC AGGTTTCATC GCACTGCCTT AGTAACCGCT CGCGCTGTTC GAAGTGATGA AATCGCCAAC
GAAGGCGAAG AAGACAAAGA TGAAGAATTA TCGAGGCAGG GTGTGAAAAA GGAGCTAGCA AATAAAGGAA TATGGAGTCA
GATGAAGGAC ATTGTGATGT TTACAGGTCC AGCAACCGGA CTTTGGATAT GTGCACCACT CATGAGTCTC ATCGATACTG
CAGTTATTGG TCAGAGAAGC TCCATTGAAC TTGCTGCTCT AGGTCCTGCT ACGGTTGTTT GTGATTACAT GAGCTACGTG
TTCATGTTTC TATCCATTGC TACTTCCAAT ATGGTTGCCA CTGCCCTTGC TAAACAGGAT AAAGAAGAAG TACAACACTA
CATATCTGTC TTGCTTTTTG TTGGGTTATC TTGTGGCATT GCGATGCTTT TGTTCACTAG GCTATTTGGT GCTGCAATAA
TAACTGCTTT CATCGGACCA AAGAATGCAC ACGTAGTACC TGCAGCTAGC AGTTATGTAA AGATTCGAGG CTTGGCATCA
CCTGCCTTAC TTGTTGGATG GGTTGCTCAG AGTGCAAGTC TTGGTATGAA AGATTCCTGG GGACCCTTGA AAGCTTTGGC
TGCTGCTAGT TTTATAAATA TAAGTGGTTG TATAATTTTG TGCATCTATT TAGGCTACGG TATTGTAGGG GCAGCATGGG
CTACAATGGT TTCACAAGTT ATTGCTGCTT GCATGATGAT TCACACTCTA AACATGAAGG GATATAATGC ACTTGCTTTC
TCCATTCCTT CAGGGAAGGA ACTTTTGACG ATATTTGGGC TTGCTGCTCC TGTATTTATG ACAATGATGT CAAAGGTGGC
TTTCTACTCA CTACTTATAT ATTTTGCTAC ATCAATGGGT ACACATACAA TGGCTGCTCA TCAAGTCATG GTCCAAACGT
ATTCCATGTG TACAGTATGG GGTGAACCTC TCTCTCAAAC TGCTCAGTCA TTTATGCCTG AACTGATATA TGGAGTAAAT
CGGAGTTTAT CAAAGGCCCG ATTGCTTCTA AGGTCTCTTG TGATAATTGG AGTTATACTT GGCTTATTGT TAGGGATTGT
TGGAACTTCA GTTCCTTGGT TATTTCCCTA CATTTTTACA CCTGATCGGA TGGTCACCCA GGAGATGCAT AAGGTGCTGA
TTCCATATTT TATAGCCCTT GCTGTAACAC CCCCTACTAT CAGCCTCGAG GGAACATTGC TGGCTGGGCG GGATCTGAGA
TTTATAAGTT TGTCAATGGT TGGATGCTTT TGCGTGGGTT CACTAGTATT ATGGGCCTTG AGTAGTAGAT TTGGCTTGCT
AGGCTGCTGG TTTTCCCTGG CAATATTTCA ATGGGCTCGG TTTTCAATGG CCCTCCAGCG CCTTCTTTCT CCCAACAGCG
TTTTATACTC CGAAGATACA GACCGGTATG AGCTGCTAAA GCTAAAGACT GCCTAGTTTG TGTTTCATCA CCCAAGTTAC
AATGACAGAA GACTATTGGG TCATCTCAAC CCACGGGTCA TTAGTTTTAT AATTCATTTT ATCTGATGAG TTAGATTGGA
TTGAATAAAT GAATTTCCTT CTACATATAT CATTACTATA ATAAGTAGCA TGAAAATTAA TTCAGATCCT TGTAGTGGTG
CACTTTGTAT TTGTTTATGT AGTACTTTAC TTTTAAAATT TGTATTTCTT AAAGAAAATA TCTTTTATTA ACTGCCATCT
TCAAAGATTA GAAT

>Vigan.06G227700.01
ATGGCATTCA AACTCAAATC ACTACCTCTT CCTTACTCTC TTCACTCCTC TACCCGCCAA AACCCGAATT TCACGCTTTC
GAACCATCGT CTTCCTCGTC GTTTCTCTGC ACCTTCTCTT CCTCTCGGTA TCTCTCTCTC AAGCACAGCT TCAGCATCCA
GGTTTCATCG CACTGCCTTA GTAACCGCTC GCGCTGTTCG AAGTGATGAA ATCGCCAACG AAGGCGAAGA AGACAAAGAT
GAAGAATTAT CGAGGCAGGG TGTGAAAAAG GAGCTAGCAA ATAAAGGAAT ATGGAGTCAG ATGAAGGACA TTGTGATGTT
TACAGGTCCA GCAACCGGAC TTTGGATATG TGCACCACTC ATGAGTCTCA TCGATACTGC AGTTATTGGT CAGAGAAGCT
CCATTGAACT TGCTGCTCTA GGTCCTGCTA CGGTTGTTTG TGATTACATG AGCTACGTGT TCATGTTTCT ATCCATTGCT
ACTTCCAATA TGGTTGCCAC TGCCCTTGCT AAACAGGATA AAGAAGAAGT ACAACACTAC ATATCTGTCT TGCTTTTTGT
TGGGTTATCT TGTGGCATTG CGATGCTTTT GTTCACTAGG CTATTTGGTG CTGCAATAAT AACTGCTTTC ATCGGACCAA
AGAATGCACA CGTAGTACCT GCAGCTAGCA GTTATGTAAA GATTCGAGGC TTGGCATCAC CTGCCTTACT TGTTGGATGG
GTTGCTCAGA GTGCAAGTCT TGGTATGAAA GATTCCTGGG GACCCTTGAA AGCTTTGGCT GCTGCTAGTT TTATAAATAT
AAGTGGTTGT ATAATTTTGT GCATCTATTT AGGCTACGGT ATTGTAGGGG CAGCATGGGC TACAATGGTT TCACAAGTTA
TTGCTGCTTG CATGATGATT CACACTCTAA ACATGAAGGG ATATAATGCA CTTGCTTTCT CCATTCCTTC AGGGAAGGAA
CTTTTGACGA TATTTGGGCT TGCTGCTCCT GTATTTATGA CAATGATGTC AAAGGTGGCT TTCTACTCAC TACTTATATA
TTTTGCTACA TCAATGGGTA CACATACAAT GGCTGCTCAT CAAGTCATGG TCCAAACGTA TTCCATGTGT ACAGTATGGG
GTGAACCTCT CTCTCAAACT GCTCAGTCAT TTATGCCTGA ACTGATATAT GGAGTAAATC GGAGTTTATC AAAGGCCCGA
TTGCTTCTAA GGTCTCTTGT GATAATTGGA GTTATACTTG GCTTATTGTT AGGGATTGTT GGAACTTCAG TTCCTTGGTT
ATTTCCCTAC ATTTTTACAC CTGATCGGAT GGTCACCCAG GAGATGCATA AGGTGCTGAT TCCATATTTT ATAGCCCTTG
CTGTAACACC CCCTACTATC AGCCTCGAGG GAACATTGCT GGCTGGGCGG GATCTGAGAT TTATAAGTTT GTCAATGGTT
GGATGCTTTT GCGTGGGTTC ACTAGTATTA TGGGCCTTGA GTAGTAGATT TGGCTTGCTA GGCTGCTGGT TTTCCCTGGC
AATATTTCAA TGGGCTCGGT TTTCAATGGC CCTCCAGCGC CTTCTTTCTC CCAACAGCGT TTTATACTCC GAAGATACAG
ACCGGTATGA GCTGCTAAAG CTAAAGACTG CCTAG

>Vigan.06G227700.01
MAFKLKSLPL PYSLHSSTRQ NPNFTLSNHR LPRRFSAPSL PLGISLSSTA SASRFHRTAL VTARAVRSDE IANEGEEDKD
EELSRQGVKK ELANKGIWSQ MKDIVMFTGP ATGLWICAPL MSLIDTAVIG QRSSIELAAL GPATVVCDYM SYVFMFLSIA
TSNMVATALA KQDKEEVQHY ISVLLFVGLS CGIAMLLFTR LFGAAIITAF IGPKNAHVVP AASSYVKIRG LASPALLVGW
VAQSASLGMK DSWGPLKALA AASFINISGC IILCIYLGYG IVGAAWATMV SQVIAACMMI HTLNMKGYNA LAFSIPSGKE
LLTIFGLAAP VFMTMMSKVA FYSLLIYFAT SMGTHTMAAH QVMVQTYSMC TVWGEPLSQT AQSFMPELIY GVNRSLSKAR
LLLRSLVIIG VILGLLLGIV GTSVPWLFPY IFTPDRMVTQ EMHKVLIPYF IALAVTPPTI SLEGTLLAGR DLRFISLSMV
GCFCVGSLVL WALSSRFGLL GCWFSLAIFQ WARFSMALQR LLSPNSVLYS EDTDRYELLK LKTA*