GBrowse Details

Vigan.06G228800.01

Basic Information:
Name: Vigan.06G228800.01
Multiple alignment
Variant Information
Position: Chr06:35862405..35865487 (+ strand)
Length: 3083
Functional Information:
Description: Similar to Fructose-bisphosphate aldolase. [T2DLU1, Phaseolus vulgaris]
GO: Biological Process: glycolysis (GO:0006096)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332)
InterPro: Fructose-bisphosphate aldolase, class-I (IPR000741)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:45.20,64.76,304.54,4401.74,15.29,431.14,5.02,479.26
Arabidopsis thaliana homolog: AT2G01140.1, AT2G21330.1, AT4G38970.1
Automatic updates:
Name: NM_001360150 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative fructose-bisphosphate aldolase 2 (LOC100775844), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:35862405..35862733 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr06:35862734..35862910 (+ strand)
Length: 177
Type: CDS
Position: Chr06:35863375..35863644 (+ strand)
Length: 270
Type: CDS
Position: Chr06:35864001..35864110 (+ strand)
Length: 110
Type: CDS
Position: Chr06:35864231..35864321 (+ strand)
Length: 91
Type: CDS
Position: Chr06:35864624..35864893 (+ strand)
Length: 270
Type: CDS
Position: Chr06:35864973..35865251 (+ strand)
Length: 279
Type: CDS
Position: Chr06:35865252..35865487 (+ strand)
Length: 236
Type: three_prime_UTR


>Vigan.06G228800.01
CACAAACAAC AATAATTGGT ACCCTTTTTG GTGCATGTAA TACATTTGTC ACTACTAGTA ACACAATGGC AAAATAATAT
CAATCTTTTT TCCAACTCTT TTTTACGAGG CGAGAAAAAA AGCATCCATT TGAACCACGA AATGGCAGCT CAGAATGGCA
AGGAAGCTCA AGTTATCATC CACATGTCAA GTGAGGATAG GTTAGCTCAC AGCAGCCTCA AACGAGACAT CACTTGAGAA
CTATAAATGA AGCGAAAACG TTGCATGTGT GGTAACGAGG CCAATACAAG GTTGTTCTGT AGGAGATAAG ATTGTGGTAG
TGCTCATCAA TGGCCTCTGC ATCACCCTCT CTGCTCAAGT CTTCACTTGT TCTTGACAAG TCTGAGTGGG TGAAGGGTCA
ATCCCTTCGC CAACCTTCTG CATCAGTGGT CAGATGCAGC CCCACCAACC CTTCAGCCCT CACCATCAGA GCTGGTTCAT
ATGCTGAGGA GCTTGTTAAG ACCGCGAAAA CTGTGGCTTC ACCAGGGAGG GGAATTTTGG CCATGGATGA GTCCAATGCT
ACCTGTGGGA AGCGTTTGGC GTCAATTGGG CTAGAGAATA CTGAAGCTAA CCGCCAGGCA TACCGTACCC TTCTTGTGAC
AGTTCCAGGC CTTGGTCAAT ACATCTCTGG TGCCATTCTC TTTGAGGAAA CTCTCTACCA ATCCACAATT GATGGCAAGA
AGATTGTTGA TGTTCTCATT GAGCAAAACA TTGTTCCTGG TATTAAGGTC GACAAGGGTT TGGTTCCTCT TGTTGGCTCC
AACGATGAGT CATGGTGCCA AGGTTTGGAT GGTCTTGCCT CTCGCTCAGC TGCATACTAT CAGCAAGGTG CCCGTTTCGC
CAAATGGCGT ACTGTTGTGA GTATCCCCAA CGGTCCCTCT GCTCTGGCTG TCAAGGAAGC AGCCTGGGGT CTGGCCCGCT
ATGCTGCAAT TTCTCAGGAC AATGGATTGG TGCCAATTGT GGAGCCAGAA ATCTTGCTTG ATGGGGAGCA TAATATTCAT
AGAACTTTTG AAGTAGCCCA AAAGGTATGG GCAGAGGTGT TCTTCTACCT TGCTGAGAAC AATGTCCTTT TTGAGGGTAT
TCTCCTGAAG CCTAGCATGG TTACACCTGG AGCTGAATCA AAGGAGAAGG CAAGTCCTCA AACAGTAGCT GATTACACCC
TCAAGCTCCT TCACAGGAGA ATCCCCCCTG CAGTCCCTGG AATTATGTTT TTGTCTGGTG GACAGTCTGA GGTTGAAGCT
ACCCTGAATT TGAATGCCAT GAACCAATCT CCAAACCCAT GGCACGTGTC ATTCTCATAT GCCAGAGCCC TTCAAAACAC
TGCCTTGAAG ACATGGGGAG GGCGCCCAGA GAATGTGAAG GCGTCACAAG ATGCACTCCT TTTCCGTGCC AAGTCCAACT
CACTGGCTCA GCTTGGAAAG TACACTGGTG AGGGTGAATC TGAAGAGGCC AAGAAGGAGT TGTTCGTCAA AGGTTACTCC
TACTAAGATG TTTCTAGTGC ATATGATACA TGTTAGGCAC CAACACCAGC AGTTGCAGTA GGTGTTGACG GAGATGAAGT
GGAAGACTAA TTTCTGTAAA ATGTAATGTT TTTATAGTCT TGGAGACTAT TTTTGTTTAT GGTTTACATC TTCCTTTACA
ACTTAATAAA CCTTTTGCTA TGAGTTGTGC ATTTTAATAT ATCCCCATAT ATAACAAAAT GGTTGAATCT CGGCAACTGA
TG

>Vigan.06G228800.01
ATGGCCTCTG CATCACCCTC TCTGCTCAAG TCTTCACTTG TTCTTGACAA GTCTGAGTGG GTGAAGGGTC AATCCCTTCG
CCAACCTTCT GCATCAGTGG TCAGATGCAG CCCCACCAAC CCTTCAGCCC TCACCATCAG AGCTGGTTCA TATGCTGAGG
AGCTTGTTAA GACCGCGAAA ACTGTGGCTT CACCAGGGAG GGGAATTTTG GCCATGGATG AGTCCAATGC TACCTGTGGG
AAGCGTTTGG CGTCAATTGG GCTAGAGAAT ACTGAAGCTA ACCGCCAGGC ATACCGTACC CTTCTTGTGA CAGTTCCAGG
CCTTGGTCAA TACATCTCTG GTGCCATTCT CTTTGAGGAA ACTCTCTACC AATCCACAAT TGATGGCAAG AAGATTGTTG
ATGTTCTCAT TGAGCAAAAC ATTGTTCCTG GTATTAAGGT CGACAAGGGT TTGGTTCCTC TTGTTGGCTC CAACGATGAG
TCATGGTGCC AAGGTTTGGA TGGTCTTGCC TCTCGCTCAG CTGCATACTA TCAGCAAGGT GCCCGTTTCG CCAAATGGCG
TACTGTTGTG AGTATCCCCA ACGGTCCCTC TGCTCTGGCT GTCAAGGAAG CAGCCTGGGG TCTGGCCCGC TATGCTGCAA
TTTCTCAGGA CAATGGATTG GTGCCAATTG TGGAGCCAGA AATCTTGCTT GATGGGGAGC ATAATATTCA TAGAACTTTT
GAAGTAGCCC AAAAGGTATG GGCAGAGGTG TTCTTCTACC TTGCTGAGAA CAATGTCCTT TTTGAGGGTA TTCTCCTGAA
GCCTAGCATG GTTACACCTG GAGCTGAATC AAAGGAGAAG GCAAGTCCTC AAACAGTAGC TGATTACACC CTCAAGCTCC
TTCACAGGAG AATCCCCCCT GCAGTCCCTG GAATTATGTT TTTGTCTGGT GGACAGTCTG AGGTTGAAGC TACCCTGAAT
TTGAATGCCA TGAACCAATC TCCAAACCCA TGGCACGTGT CATTCTCATA TGCCAGAGCC CTTCAAAACA CTGCCTTGAA
GACATGGGGA GGGCGCCCAG AGAATGTGAA GGCGTCACAA GATGCACTCC TTTTCCGTGC CAAGTCCAAC TCACTGGCTC
AGCTTGGAAA GTACACTGGT GAGGGTGAAT CTGAAGAGGC CAAGAAGGAG TTGTTCGTCA AAGGTTACTC CTACTAA

>Vigan.06G228800.01
MASASPSLLK SSLVLDKSEW VKGQSLRQPS ASVVRCSPTN PSALTIRAGS YAEELVKTAK TVASPGRGIL AMDESNATCG
KRLASIGLEN TEANRQAYRT LLVTVPGLGQ YISGAILFEE TLYQSTIDGK KIVDVLIEQN IVPGIKVDKG LVPLVGSNDE
SWCQGLDGLA SRSAAYYQQG ARFAKWRTVV SIPNGPSALA VKEAAWGLAR YAAISQDNGL VPIVEPEILL DGEHNIHRTF
EVAQKVWAEV FFYLAENNVL FEGILLKPSM VTPGAESKEK ASPQTVADYT LKLLHRRIPP AVPGIMFLSG GQSEVEATLN
LNAMNQSPNP WHVSFSYARA LQNTALKTWG GRPENVKASQ DALLFRAKSN SLAQLGKYTG EGESEEAKKE LFVKGYSY*