GBrowse Details

Vigan.06G229600.01

Basic Information:
Name: Vigan.06G229600.01
Multiple alignment
Variant Information
Position: Chr06:35910230..35912958 (+ strand)
Length: 2729
Functional Information:
Description: Similar to Aldo-keto reductase, putative. [B9RG54, Ricinus communis]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Aldo/keto reductase (IPR001395)
Aldo/keto reductase, conserved site (IPR018170)
Aldo/keto reductase subgroup (IPR020471)
NADP-dependent oxidoreductase domain (IPR023210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.63,7.22,55.32,67.66,60.52,108.16,58.84,44.79
Arabidopsis thaliana homolog: AT2G21250.1, AT2G21260.1
Automatic updates:
Name: NM_001253237 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NADP-dependent D-sorbitol-6-phosphate dehydrogenase-like (LOC100806500), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:35910230..35910297 (+ strand)
Length: 68
Type: five_prime_UTR
Position: Chr06:35910298..35910430 (+ strand)
Length: 133
Type: CDS
Position: Chr06:35910814..35910908 (+ strand)
Length: 95
Type: CDS
Position: Chr06:35911021..35911138 (+ strand)
Length: 118
Type: CDS
Position: Chr06:35911457..35911589 (+ strand)
Length: 133
Type: CDS
Position: Chr06:35912136..35912355 (+ strand)
Length: 220
Type: CDS
Position: Chr06:35912489..35912719 (+ strand)
Length: 231
Type: CDS
Position: Chr06:35912720..35912958 (+ strand)
Length: 239
Type: three_prime_UTR


>Vigan.06G229600.01
GTAGCATAAG AGATCATGGT CAAAGCATGC AGTAGCAGAG GTGAGTGGAG GAGGAAGAGA AGAAAAACAT GGCAATTACG
CTCAACAATG GCTTCAAGAT GCCCATCATT GGACTGGGTG TGTGGCGCAT GGAAGGAAAA GCAATCAAAG ACATAATTCT
CAATTCCATC AAAATTGGTT ATCGCCATTT TGATTGTGCT GCTGACTACA AGAACGAAGC AGAAGTTGGA GAGGCGCTTA
AGGAGGCTTT TGATAGTGGC CTTGTGAAGA GGGAGGACCT TTTCATTACC ACAAAGCTTT GGAATTCTGA TCATGGACAC
GTTCTTGAGG CATGTAAAGA CAGTCTCAAG AAGCTTCAGT TAACTTATCT AGACTTGTAT CTTGTTCATT TTCCTGTTGC
CGTAAGGCAT ACTGGGGTTG GTAATACTTC TAGTCCTTTG GATGATGATG GAGTGCTGGA TATAGATACC ACCGTATCCC
TGGAAACTAC CTGGCATGCG ATGGAGGATC TTGTTTCATC CGGCTTAGTT CGAAGCATAG GGATCAGCAA CTATGATATC
TATCTGACAA GAGATTGCTT AGCATATTCC AAGATAAAAC CTGCTGTAAA TCAGATTGAA ACCCATCCAT ACTTCCAGCG
TGAGTCTCTC GTCAAGTTTT GTCAGAAGCA TGGGATTTGT GTCACTGCAC ACACTCCATT AGGAGGTGGT GCAGCAAATT
CTGAATGGTT TGGTACAGTT TCATGTTTGG ATGACCAAGT TTTCAAAGGT CTGGCTGAAA AATACAAAAA GACTACCGCC
CAGATTGCTC TTCGCTGGGG CATTCAGAGG AACACTGTGG TCATTCCCAA ATCGTCAAAA CTGGAGAGGC TGAAAGAAAA
CTTTCAGGTT TTTGATTTTG AGTTGTCTAA AGAGGACCTG AAGCTCATTG GAAATCTGGA TAAAGCATAT CGAACTAATC
AACCAGCTGT GTTTTGGGGC ATAAATCTGT ATGCATGAGA ATACCGTTCC TAAGAATGTA TCATGAACTT CCAATATGCA
AAAACATACT GGCCGTTGGA TCTTGAGACT TGTCTTGACA TTCAGAGATG GTATAAGCTT CAGTCTCCTT GGTAGTCCAT
TGATTTGATC ATCCAATCTC TTCTTTTCGA TGGTTCAAAT ATTATCTTTT TAGCCCATAG AAAATTTCGT GGACTAAATA
AAAGGGAGAT TTCTGAACAT TTTTAGTTAA TTTTTTT

>Vigan.06G229600.01
ATGGCAATTA CGCTCAACAA TGGCTTCAAG ATGCCCATCA TTGGACTGGG TGTGTGGCGC ATGGAAGGAA AAGCAATCAA
AGACATAATT CTCAATTCCA TCAAAATTGG TTATCGCCAT TTTGATTGTG CTGCTGACTA CAAGAACGAA GCAGAAGTTG
GAGAGGCGCT TAAGGAGGCT TTTGATAGTG GCCTTGTGAA GAGGGAGGAC CTTTTCATTA CCACAAAGCT TTGGAATTCT
GATCATGGAC ACGTTCTTGA GGCATGTAAA GACAGTCTCA AGAAGCTTCA GTTAACTTAT CTAGACTTGT ATCTTGTTCA
TTTTCCTGTT GCCGTAAGGC ATACTGGGGT TGGTAATACT TCTAGTCCTT TGGATGATGA TGGAGTGCTG GATATAGATA
CCACCGTATC CCTGGAAACT ACCTGGCATG CGATGGAGGA TCTTGTTTCA TCCGGCTTAG TTCGAAGCAT AGGGATCAGC
AACTATGATA TCTATCTGAC AAGAGATTGC TTAGCATATT CCAAGATAAA ACCTGCTGTA AATCAGATTG AAACCCATCC
ATACTTCCAG CGTGAGTCTC TCGTCAAGTT TTGTCAGAAG CATGGGATTT GTGTCACTGC ACACACTCCA TTAGGAGGTG
GTGCAGCAAA TTCTGAATGG TTTGGTACAG TTTCATGTTT GGATGACCAA GTTTTCAAAG GTCTGGCTGA AAAATACAAA
AAGACTACCG CCCAGATTGC TCTTCGCTGG GGCATTCAGA GGAACACTGT GGTCATTCCC AAATCGTCAA AACTGGAGAG
GCTGAAAGAA AACTTTCAGG TTTTTGATTT TGAGTTGTCT AAAGAGGACC TGAAGCTCAT TGGAAATCTG GATAAAGCAT
ATCGAACTAA TCAACCAGCT GTGTTTTGGG GCATAAATCT GTATGCATGA 

>Vigan.06G229600.01
MAITLNNGFK MPIIGLGVWR MEGKAIKDII LNSIKIGYRH FDCAADYKNE AEVGEALKEA FDSGLVKRED LFITTKLWNS
DHGHVLEACK DSLKKLQLTY LDLYLVHFPV AVRHTGVGNT SSPLDDDGVL DIDTTVSLET TWHAMEDLVS SGLVRSIGIS
NYDIYLTRDC LAYSKIKPAV NQIETHPYFQ RESLVKFCQK HGICVTAHTP LGGGAANSEW FGTVSCLDDQ VFKGLAEKYK
KTTAQIALRW GIQRNTVVIP KSSKLERLKE NFQVFDFELS KEDLKLIGNL DKAYRTNQPA VFWGINLYA*