GBrowse Details

Vigan.06G234400.01

Basic Information:
Name: Vigan.06G234400.01
Multiple alignment
Variant Information
Position: Chr06:36181257..36186492 (+ strand)
Length: 5236
Functional Information:
Description: Similar to Peroxisomal ascorbate peroxidase. [Q5QIA9, Vigna unguiculata]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Haem peroxidase, plant/fungal/bacterial (IPR002016)
Plant ascorbate peroxidase (IPR002207)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:125.81,103.64,71.05,123.77,36.00,76.24,47.97,47.41
Arabidopsis thaliana homolog: AT4G35000.1
Automatic updates:
Name: NM_001251432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal ascorbate peroxidase (LOC100170727), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Name: NM_001354113 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ascorbate peroxidase (LOC100170737), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:36181257..36181454 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr06:36181455..36181570 (+ strand)
Length: 116
Type: CDS
Position: Chr06:36181725..36181849 (+ strand)
Length: 125
Type: CDS
Position: Chr06:36182097..36182146 (+ strand)
Length: 50
Type: CDS
Position: Chr06:36183460..36183525 (+ strand)
Length: 66
Type: CDS
Position: Chr06:36183612..36183660 (+ strand)
Length: 49
Type: CDS
Position: Chr06:36183803..36183885 (+ strand)
Length: 83
Type: CDS
Position: Chr06:36183971..36184050 (+ strand)
Length: 80
Type: CDS
Position: Chr06:36184186..36184288 (+ strand)
Length: 103
Type: CDS
Position: Chr06:36185903..36186094 (+ strand)
Length: 192
Type: CDS
Position: Chr06:36186095..36186492 (+ strand)
Length: 398
Type: three_prime_UTR


>Vigan.06G234400.01
CGTGGCAATA GCGAAGTGGG AAGGCATGGG AATATGCCAT GGTAATGGGA GCACCACCCA TACATACAGC ACAATTATCC
ATTCACTCAT TCATTCAATA CATTCTCAGT TAGCAGTTAG CAGTGCAGTG AGTTTTGCTT CTTTCTTGTT TGGTTTCTCC
TTTGTGCGTG TCCAAACAGA TTCCGTTATC CCCTGAGCAT GGCGTTGCCG GTGGTGGTGG ACTCAGAGTA CCTCAAGGAG
GTCGACAAGG CTCGCCGCGA TCTCCGTGCA CTAATCGCTA ACAGGAACTG CGCTCCTCTC ATGCTTCGGC TAGCCTGGCA
CGATGCCGGC ACTTACGATG CCAAATCCAA GACCGGTGGA CCTAACGGTT CTATCCGAAA CGAGGAAGAG TTTTCTCACG
GTTCCAACAA TGGCTTGAAA AAGGCTATTG ATTTCTGCGA GGAAGTGAAG GAAAAACATC CTAAGATTAC GTACGCAGAT
CTTTACCAGC TTGCTGGTGT TGTTGCAGTT GAGGTTACGG GGGGTCCCAC AATTGATTTT GTCCCTGGTA GAAAGGATTC
AAAAGTATCC CCTAAAGAAG GGCGGCTTCC TGATGCTAAA CAAGGTGTTT CACATCTCCG TAATATCTTC TATCGAATGG
GCTTGACTGA TCGAGATATC GTTTCACTGT CTGGAGGGCA TACGCTGGGG AGAGCACATC CAGAGAGATC AGGGTTTGAT
GGACCTTGGA CGGAGGACCC TCTGAAGTTT GATAACTCTT ACTTTGTGGA ACTTTTGAAA GGCGAGTATA TTGGGCTGCT
CAAACTTCCA ACAGACAAGG CTTTGTTGGA GGACCCTGAA TTTCGCCGTT ACGTTGAACT ATATGCGAAG GACGAGGATG
CATTTTTCAG GGATTATGCT GAAGCGCATA AGAAACTTTC AGAGCTAGGC TTTGTGCCAA GTTCAAAGGC GATTTCTATT
AAGGATGGGA CCGTACTGGC ACAAGGTGCT GTAGGAGTTG TAGTTACTGC GGCGGTGGTG ATCCTCAGTT ACTTGTATGA
AGTTCGCAAA AGGGGGAAGT AGACCGGGAC ATGTTCATCT CTCTTGGATG TTACATTTGG TTGACCCCGA CCCATTATGT
GCAAAATAGG GTTCATTTTT GCAGCTTCAG TTTCTGTTTA CTTGGCACCA ATAAAGAATA ATGCCACAGC CACGCTGACT
TTTATATGAA TAGACTAAAA ATATCCTGAA TACTCAATTT AAGCGCAACG TCATAATACG TAAATACAAA AAATTTAGCA
TTCCCAGTTA CGTGTTATTC ACTGTAAGGT TAGAGGAGGG TAGACATGCT CATTTGCTCA AATCAAAAAG GCTAATTTGT
CATGCATGTT TCGTGCCAGG AAATCAGAAT TACAAAAACT GGTACTGCGC TAGCTGAGAT TTAAGAAAAT CATGCATTAA
GTTAGTCTGC AGTAGACTAG 

>Vigan.06G234400.01
ATGGCGTTGC CGGTGGTGGT GGACTCAGAG TACCTCAAGG AGGTCGACAA GGCTCGCCGC GATCTCCGTG CACTAATCGC
TAACAGGAAC TGCGCTCCTC TCATGCTTCG GCTAGCCTGG CACGATGCCG GCACTTACGA TGCCAAATCC AAGACCGGTG
GACCTAACGG TTCTATCCGA AACGAGGAAG AGTTTTCTCA CGGTTCCAAC AATGGCTTGA AAAAGGCTAT TGATTTCTGC
GAGGAAGTGA AGGAAAAACA TCCTAAGATT ACGTACGCAG ATCTTTACCA GCTTGCTGGT GTTGTTGCAG TTGAGGTTAC
GGGGGGTCCC ACAATTGATT TTGTCCCTGG TAGAAAGGAT TCAAAAGTAT CCCCTAAAGA AGGGCGGCTT CCTGATGCTA
AACAAGGTGT TTCACATCTC CGTAATATCT TCTATCGAAT GGGCTTGACT GATCGAGATA TCGTTTCACT GTCTGGAGGG
CATACGCTGG GGAGAGCACA TCCAGAGAGA TCAGGGTTTG ATGGACCTTG GACGGAGGAC CCTCTGAAGT TTGATAACTC
TTACTTTGTG GAACTTTTGA AAGGCGAGTA TATTGGGCTG CTCAAACTTC CAACAGACAA GGCTTTGTTG GAGGACCCTG
AATTTCGCCG TTACGTTGAA CTATATGCGA AGGACGAGGA TGCATTTTTC AGGGATTATG CTGAAGCGCA TAAGAAACTT
TCAGAGCTAG GCTTTGTGCC AAGTTCAAAG GCGATTTCTA TTAAGGATGG GACCGTACTG GCACAAGGTG CTGTAGGAGT
TGTAGTTACT GCGGCGGTGG TGATCCTCAG TTACTTGTAT GAAGTTCGCA AAAGGGGGAA GTAG

>Vigan.06G234400.01
MALPVVVDSE YLKEVDKARR DLRALIANRN CAPLMLRLAW HDAGTYDAKS KTGGPNGSIR NEEEFSHGSN NGLKKAIDFC
EEVKEKHPKI TYADLYQLAG VVAVEVTGGP TIDFVPGRKD SKVSPKEGRL PDAKQGVSHL RNIFYRMGLT DRDIVSLSGG
HTLGRAHPER SGFDGPWTED PLKFDNSYFV ELLKGEYIGL LKLPTDKALL EDPEFRRYVE LYAKDEDAFF RDYAEAHKKL
SELGFVPSSK AISIKDGTVL AQGAVGVVVT AAVVILSYLY EVRKRGK*