GBrowse Details

Vigan.06G235200.01

Basic Information:
Name: Vigan.06G235200.01
Multiple alignment
Variant Information
Position: Chr06:36228514..36229902 (- strand)
Length: 1389
Functional Information:
Description: Similar to actin-depolymerizing factor 5-like. [XP_004505784.1, Cicer arietinum]
GO: Biological Process: actin filament depolymerization (GO:0030042)
Cellular Component: intracellular (GO:0005622)
Cellular Component: actin cytoskeleton (GO:0015629)
Molecular Function: actin binding (GO:0003779)
InterPro: Actin-binding, cofilin/tropomyosin type (IPR002108)
ADF/Cofilin/Destrin (IPR017904)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.88,1.96,53.20,20.40,68.31,125.81,105.83,59.17
Arabidopsis thaliana homolog: AT2G16700.1
Automatic updates:
Name: NM_001249906 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526982 (LOC100526982), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36228514..36228955 (- strand)
Length: 442
Type: three_prime_UTR
Position: Chr06:36228956..36229106 (- strand)
Length: 151
Type: CDS
Position: Chr06:36229385..36229644 (- strand)
Length: 260
Type: CDS
Position: Chr06:36229802..36229822 (- strand)
Length: 21
Type: CDS
Position: Chr06:36229823..36229902 (- strand)
Length: 80
Type: five_prime_UTR


>Vigan.06G235200.01
AGATTCTTGT CAACTTTCAA CGCTCAATAA GAAAAGAGAA AAAGTAAGGG AAACTTTGTT CTTCTTCTCA CCTCATAAAA
ATGGCGATGG CGTTCAAAAT GGCGACTACT GGGATGTGGG TGACGGATGA GTGCAAGAAC TCATTCATGG AAATGAAGTG
GAAGAAGGTG CATAGATACA TAGTGTTTAA GATCGATGAA AAGTCAAGGC TTGTGACCGT TGATAAGGTT GGTGGTCCCG
GCGAAAGCTA CGGTGATCTT GCAGCATCTT TGCCCGACGA CGATTGTAGA TATGCCGTGT TCGATTTTGA TTTTGTCACC
GTCGATAACT GCCGGAAGAG CAAGATCTTC TTCATTGCAT GGTCTCCAAC AGCATCAAGG ATAAGAGCAA AGATGCTGTA
CGCAACATCA AAGGATGGGC TGAGAAGAGC TCTGGATGGA ATAAGCTATG AAGTTCAGGC CACTGACCCA ACTGAGATGG
GATTCGATGT AATTCAAGAC AGAGCGAAAT AGATGCCCTT TTTTAAGTGG GAATCTTACT CCTAAATTAT GTGCTCATCC
ACCTAGCTAA TCAATCAATT AATCCCTCAA TCTTACTCTC TTGTTTCCGA TAATAATACT TAAATAACTA TATCTATATA
TGTATATGGT CCATCCGATG ACTCTGTATG ACATGTGCTC TTCTTATTTC TTGTTTTTAT GCCAGTTTAA TTGTGTTGGT
TTCGGCACCA CCGTGATGTA AGTGGGGCAT CTAATCTTCA ATCCTTAGTC ATGATAATAA GTTATGTGTA ATATATGACT
GTCGGGTGTA TGATAAGTTA ATGGCAACAA ACTTTGGTTG CAATCTCTTT AATGATGAAA ATTATTGAAA AGAATGGATT
AGCTCAACTT TTCACACGGA AAGTTGATGC CTTACCGTGT ATAACTCACG CTTTTCCATT CTACATTCTT AATA

>Vigan.06G235200.01
ATGGCGATGG CGTTCAAAAT GGCGACTACT GGGATGTGGG TGACGGATGA GTGCAAGAAC TCATTCATGG AAATGAAGTG
GAAGAAGGTG CATAGATACA TAGTGTTTAA GATCGATGAA AAGTCAAGGC TTGTGACCGT TGATAAGGTT GGTGGTCCCG
GCGAAAGCTA CGGTGATCTT GCAGCATCTT TGCCCGACGA CGATTGTAGA TATGCCGTGT TCGATTTTGA TTTTGTCACC
GTCGATAACT GCCGGAAGAG CAAGATCTTC TTCATTGCAT GGTCTCCAAC AGCATCAAGG ATAAGAGCAA AGATGCTGTA
CGCAACATCA AAGGATGGGC TGAGAAGAGC TCTGGATGGA ATAAGCTATG AAGTTCAGGC CACTGACCCA ACTGAGATGG
GATTCGATGT AATTCAAGAC AGAGCGAAAT AG

>Vigan.06G235200.01
MAMAFKMATT GMWVTDECKN SFMEMKWKKV HRYIVFKIDE KSRLVTVDKV GGPGESYGDL AASLPDDDCR YAVFDFDFVT
VDNCRKSKIF FIAWSPTASR IRAKMLYATS KDGLRRALDG ISYEVQATDP TEMGFDVIQD RAK*