GBrowse Details

Vigan.06G243100.01

Basic Information:
Name: Vigan.06G243100.01
Multiple alignment
Variant Information
Position: Chr06:36843114..36845830 (- strand)
Length: 2717
Functional Information:
Description: Similar to Multicopy suppressor of ras1. [G7JN64, Medicago truncatula]
GO: Molecular Function: methyltransferase activity (GO:0008168)
InterPro: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (IPR005304)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:58.02,49.26,25.52,35.88,30.87,23.03,32.56,26.77
Arabidopsis thaliana homolog: AT3G57000.1
Automatic updates:
Name: NM_001252689 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribosomal RNA small subunit methyltransferase NEP1-like (LOC100788480), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252990 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribosomal RNA small subunit methyltransferase NEP1-like (LOC100778294), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36843114..36843450 (- strand)
Length: 337
Type: three_prime_UTR
Position: Chr06:36843451..36843530 (- strand)
Length: 80
Type: CDS
Position: Chr06:36844404..36844461 (- strand)
Length: 58
Type: CDS
Position: Chr06:36844543..36844625 (- strand)
Length: 83
Type: CDS
Position: Chr06:36844795..36844905 (- strand)
Length: 111
Type: CDS
Position: Chr06:36845003..36845147 (- strand)
Length: 145
Type: CDS
Position: Chr06:36845232..36845324 (- strand)
Length: 93
Type: CDS
Position: Chr06:36845423..36845686 (- strand)
Length: 264
Type: CDS
Position: Chr06:36845687..36845830 (- strand)
Length: 144
Type: five_prime_UTR


>Vigan.06G243100.01
GTTAAGTTTT CATCAAACCT TCACTACACC AAGGTTTTGG GTGTACCATA TTGTAAGCTC AGATAAAAGG GTTTCCACAA
AAAGCAGAAC CCTAGGACGT GCAATCAGTG TTTGGAGAGT TGGGGTTTGT TTGAGGCAGA GGCAATGACA CGACCTTTTG
GTGTGAAGGG GAAGAAGCGC AAGCACTCCC AATCCAAACA GGACTCAGAA GAAGAACACC CGCAGCCGCC ACCGAAGAAA
GCTGTCGCGG AAGAGAGCAA AGAATCACCA CCACAAGCAG AACCTGCACC AACAGAAGAG GATGAATTGA GCGGTATCCC
AATTGCGCCC AGCGAGAAAG AAAGTACCAA ATCCAATGTC ATCTTCATTC TCGAAAAAGC TTCTCTTGAA GTCGCCAAAG
TCGGCAAGAC ATATCAGTTG TTGAATTCCG ATGACCATGC CAATTTCCTT CGCAAACACA ACAAGAATCC TGGAGATTAT
AGGCCGGACA TTACTCATCA ATCTCTTCTA TCTATTTTAG ATAGTCCACT GAATAAAGCT GGAAGATTGC GAAATGTTTA
TATAAGAACG GAGAAAGGTG TTCTTATTGA GGTTAAGCCC TTTGTTCGAA TTCCTAGAAC CTTCAAACGT TTTGCTGGTG
TTATGTTGGA ACTGCTTCAA AAGCTGAGCA TATCTGCTGT TGGCAAGCGC GAAAAACTCC TCCGAACAAT AAAAAATCCT
GTCACACAGT ATTTGCCTGT CAACTCACAA AAAATAGGTC TATCATATAG TTCAGACAAG CTTGTAGATA TGGATGACTA
TGTATCAAAG ATTTCCAGCG ATATGGACCT TGTTTTTGTG GTAGGAGCAA TGGCCCATGG GAAGATTGAG ACAGATTATA
CAGAAGATTA CATAGCAATT TCTGGGTACC CTCTAAGTGC TGCTTATTGT ATTACAAGGA TTACTGGTGC CCTTGAGAGA
AAGTGGAAGA TTTTGTGATT TAACACCTTC AGTTAGCCTG GGAAACGATT TACTAATTCG AGTTCCACAG CAATTTATGT
AATATCAGGG TAGGGTATTA TTGTCTTAAC AGACATATAG GAAATACAAT ATAAGATTTT TTTTTTCCGA GGTATTTTTA
TGGTCTGATT GTCCTGGACC AGATCGATGT TTCACTACTG TATTTGAATT AAATGTTTAA TGTATTAATT TGCTAGAGTA
TGCTTTCTTA ACAGAGCTAG ATCTCAATGT TGCTTACCTA GCTGAGATAC GTTGTTTGGG AGTCACTTTT TCCTGGTTCA
AAGTTAAGAA TAAAAGTTTC ACATTTTATT GAAAA

>Vigan.06G243100.01
ATGACACGAC CTTTTGGTGT GAAGGGGAAG AAGCGCAAGC ACTCCCAATC CAAACAGGAC TCAGAAGAAG AACACCCGCA
GCCGCCACCG AAGAAAGCTG TCGCGGAAGA GAGCAAAGAA TCACCACCAC AAGCAGAACC TGCACCAACA GAAGAGGATG
AATTGAGCGG TATCCCAATT GCGCCCAGCG AGAAAGAAAG TACCAAATCC AATGTCATCT TCATTCTCGA AAAAGCTTCT
CTTGAAGTCG CCAAAGTCGG CAAGACATAT CAGTTGTTGA ATTCCGATGA CCATGCCAAT TTCCTTCGCA AACACAACAA
GAATCCTGGA GATTATAGGC CGGACATTAC TCATCAATCT CTTCTATCTA TTTTAGATAG TCCACTGAAT AAAGCTGGAA
GATTGCGAAA TGTTTATATA AGAACGGAGA AAGGTGTTCT TATTGAGGTT AAGCCCTTTG TTCGAATTCC TAGAACCTTC
AAACGTTTTG CTGGTGTTAT GTTGGAACTG CTTCAAAAGC TGAGCATATC TGCTGTTGGC AAGCGCGAAA AACTCCTCCG
AACAATAAAA AATCCTGTCA CACAGTATTT GCCTGTCAAC TCACAAAAAA TAGGTCTATC ATATAGTTCA GACAAGCTTG
TAGATATGGA TGACTATGTA TCAAAGATTT CCAGCGATAT GGACCTTGTT TTTGTGGTAG GAGCAATGGC CCATGGGAAG
ATTGAGACAG ATTATACAGA AGATTACATA GCAATTTCTG GGTACCCTCT AAGTGCTGCT TATTGTATTA CAAGGATTAC
TGGTGCCCTT GAGAGAAAGT GGAAGATTTT GTGA

>Vigan.06G243100.01
MTRPFGVKGK KRKHSQSKQD SEEEHPQPPP KKAVAEESKE SPPQAEPAPT EEDELSGIPI APSEKESTKS NVIFILEKAS
LEVAKVGKTY QLLNSDDHAN FLRKHNKNPG DYRPDITHQS LLSILDSPLN KAGRLRNVYI RTEKGVLIEV KPFVRIPRTF
KRFAGVMLEL LQKLSISAVG KREKLLRTIK NPVTQYLPVN SQKIGLSYSS DKLVDMDDYV SKISSDMDLV FVVGAMAHGK
IETDYTEDYI AISGYPLSAA YCITRITGAL ERKWKIL*