GBrowse Details

Vigan.06G243300.01

Basic Information:
Name: Vigan.06G243300.01
Multiple alignment
Variant Information
Position: Chr06:36852888..36856593 (- strand)
Length: 3706
Functional Information:
Description: Similar to Uncharacterized protein. [I1LPH2, Glycine max]
GO: Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045)
InterPro: Peptidyl-tRNA hydrolase, PTH2 (IPR002833)
Peptidyl-tRNA hydrolase II domain (IPR023476)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.56,15.35,15.95,18.71,12.78,23.48,19.09,18.45
Arabidopsis thaliana homolog: AT5G16870.1
Automatic updates:
Name: NM_001250574 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527794 (LOC100527794), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289372 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-tRNA hydrolase 2, mitochondrial-like (LOC102664938), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36852888..36853307 (- strand)
Length: 420
Type: three_prime_UTR
Position: Chr06:36853308..36853357 (- strand)
Length: 50
Type: CDS
Position: Chr06:36853642..36853668 (- strand)
Length: 27
Type: CDS
Position: Chr06:36854760..36854829 (- strand)
Length: 70
Type: CDS
Position: Chr06:36855685..36855754 (- strand)
Length: 70
Type: CDS
Position: Chr06:36855842..36855901 (- strand)
Length: 60
Type: CDS
Position: Chr06:36856112..36856170 (- strand)
Length: 59
Type: CDS
Position: Chr06:36856262..36856492 (- strand)
Length: 231
Type: CDS
Position: Chr06:36856493..36856593 (- strand)
Length: 101
Type: five_prime_UTR


>Vigan.06G243300.01
CTTGTAATCA GAAATTGGCC ATTTACCAAT TTATCCAAAA AAAAGCGTAA GATTGTGTGA TATTGTTTGC TTCCTCAGAA
ACCCTAAAAG TTGAATCATA GATGGAACTG ACATGGTTGA GTGCCATTCT GGTGGGAGCT GGTTATCTTG CTTTGGGTTA
CTTCATTGGT TCTCAGTATC CTCCTCGTTT CATTTTCTCA CGTAAATTAT TGACGAAAGA CAACGATGCT ACACTTTTCA
ACGATACCAA CAATAAGAGA AATAGTAAGT CCAAACTCAA AGACCCTCTT CAGATTGAAC AACTAGCTGA CATTCTCGAT
GATTTTAAGA TGATTCTCGT TGTCAGAAAT GATCTTAAAA TGGGCAAAGG GAAGATTGCT GCTCAGTGCA GTCATGCAAC
GTTGGGTCTC TATAAAAAGC TCCTTCATCG AGCACCAAAG GCGTTGAATA GGTGGGAGAT GTCTGCGCAG CCAAAGGTTG
TTGTCAAAAT TGAAAGTGAA GAAGATATGC TTGCTATGCA GGAAAGGGCT AAATCTCTGA AGTTACCCAC CCATATCACA
ATTGATGCTG GGAGAACACA GATTGCACCA AATTCCAGAA CAGTGATGGC AATTCTTGGA CCCGTTGAGG TAGTAGATGA
GGTAACAGGT GGACTTAAAC TACTATAGTC TTCTGTCGGA TCAACATGGT GCTGTTGATC ATGAACCGCG AGTGTTCACG
AAGGATAGCA GCTCGAACTA ATTATGAACC GCGTGAAGAT TTGCTGTGTT CTTTGTCTAC AAAATGATTT GGGATTAATC
TTTAGTTGAC AGTGATGATG ATGATAATGA TGATGATGAA ATTTTTGTTT TAAAATCCTG GCTGATAAAA ACTGTGGAAC
TGAGTTCAGT TTGTATGAGA TATTATTTAT ATCAGGGTGA TTCTTGGCTT CCAAAATGTT ATTTATGGTG ATTCCATAGT
TTTTGGATGG TGGTTCTTGA TTGATTTTCT AAGGTATTTG AATTTCTCTG TCATTGGATT TCACTGCATA GAATAATTTC
TATAGAAGTC AAGTCTTACA ACAAAACCCT TGCAATCCAA ACCATTCA

>Vigan.06G243300.01
ATGGAACTGA CATGGTTGAG TGCCATTCTG GTGGGAGCTG GTTATCTTGC TTTGGGTTAC TTCATTGGTT CTCAGTATCC
TCCTCGTTTC ATTTTCTCAC GTAAATTATT GACGAAAGAC AACGATGCTA CACTTTTCAA CGATACCAAC AATAAGAGAA
ATAGTAAGTC CAAACTCAAA GACCCTCTTC AGATTGAACA ACTAGCTGAC ATTCTCGATG ATTTTAAGAT GATTCTCGTT
GTCAGAAATG ATCTTAAAAT GGGCAAAGGG AAGATTGCTG CTCAGTGCAG TCATGCAACG TTGGGTCTCT ATAAAAAGCT
CCTTCATCGA GCACCAAAGG CGTTGAATAG GTGGGAGATG TCTGCGCAGC CAAAGGTTGT TGTCAAAATT GAAAGTGAAG
AAGATATGCT TGCTATGCAG GAAAGGGCTA AATCTCTGAA GTTACCCACC CATATCACAA TTGATGCTGG GAGAACACAG
ATTGCACCAA ATTCCAGAAC AGTGATGGCA ATTCTTGGAC CCGTTGAGGT AGTAGATGAG GTAACAGGTG GACTTAAACT
ACTATAG

>Vigan.06G243300.01
MELTWLSAIL VGAGYLALGY FIGSQYPPRF IFSRKLLTKD NDATLFNDTN NKRNSKSKLK DPLQIEQLAD ILDDFKMILV
VRNDLKMGKG KIAAQCSHAT LGLYKKLLHR APKALNRWEM SAQPKVVVKI ESEEDMLAMQ ERAKSLKLPT HITIDAGRTQ
IAPNSRTVMA ILGPVEVVDE VTGGLKLL*