GBrowse Details

Vigan.06G243800.01

Basic Information:
Name: Vigan.06G243800.01
Multiple alignment
Variant Information
Position: Chr06:36894281..36897893 (- strand)
Length: 3613
Functional Information:
Description: Similar to translocon-associated protein subunit alpha-like. [XP_004505694.1, Cicer arietinum]
GO: Cellular Component: endoplasmic reticulum (GO:0005783)
InterPro: Translocon-associated protein (TRAP), alpha subunit (IPR005595)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.46,69.56,74.60,38.29,97.22,204.97,79.53,50.83
Arabidopsis thaliana homolog: AT2G16595.1
Automatic updates:
Name: NM_001253052 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max translocon-associated protein subunit alpha-like (LOC100820543), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36894281..36894791 (- strand)
Length: 511
Type: three_prime_UTR
Position: Chr06:36894792..36894917 (- strand)
Length: 126
Type: CDS
Position: Chr06:36895306..36895509 (- strand)
Length: 204
Type: CDS
Position: Chr06:36895613..36895690 (- strand)
Length: 78
Type: CDS
Position: Chr06:36896389..36896477 (- strand)
Length: 89
Type: CDS
Position: Chr06:36896705..36896755 (- strand)
Length: 51
Type: CDS
Position: Chr06:36896855..36897016 (- strand)
Length: 162
Type: CDS
Position: Chr06:36897661..36897730 (- strand)
Length: 70
Type: CDS
Position: Chr06:36897731..36897893 (- strand)
Length: 163
Type: five_prime_UTR


>Vigan.06G243800.01
GAAAAACAGT ATTTAAGACA TATAAGCTAA CAGAGTATGA CCCACATGTA AACGACATCG TTGTTGGAAA TCTCCTTCTC
AAACATTACA AATTACAAAT CTGTGTTTCA GGGTTGAAAT TTCACACGTT GAAATTTGGT ACCAACTCCA GCCCTACACC
ACCATGGCCT CCATCCACAA ATTTTTGCTT TTCTCTCTCG CCCTTCTCCT CTTCGCTTCT CCTTTTCTCC AAGTTGCTAG
GTGTCAGTCA GACTCCGATG ATGCTGTGGA TAACATTGAA GAATCAAGCG ATATTGGCAT TGTTGGGGAT GATGCCCAAG
ACTTTGGTGA TGGGACCTTG TCTTCCGCTC CAGGAATTGA TACAATAAGT GTATTTCCAA AAAACAGCGC ACGATTGATA
ACAGCTGGAG AAGAGTCAGA GCTGCTTGTT GGTGTTAAAA ATGATGGGGA TTCAAGCTTG AATGTTATTG CAATCAGGGC
TAGTATTCAC CTTCCTTTTG ATCACAAGCT GCTGGTTCAA AATCTTACTA CCCAGGGTTT CAATAATGGT TCTGTACCAG
CCTCAGCACA GGCTACTTTC CCATATTTAT TTGCAGTCAG TAAGTTCATG CAGCCTGGAA ATTTTGATCT TGTGGGCACT
ATTATTTATG AGATAGATGA TCATCCATTC CAAAGCGTCT TCTTTAATGG CACTGTTGAA GTTGCTGAAG CTGGTGGTTT
TCTTAGCATG GAGTCTGTTT TTCTTGTTAC ACTGGGGGCT GCTCTCCTTG TCCTCCTGGG GCTATGGATT CATGGTCAAA
TACAACACCT TTCTAAGAAA ACAAAGAGGG CTCCAAAAGT TGAAGTGGGA ACAAGGTCTA CAGATGCTTC AACTGATGAA
TGGCTACAGG TTTGTTCTTA TGCCTTGTAC TATACTTGTT GGATTTCATG TTTGATGCTT TAACCTTTGA TGTAACACTG
ATGGGTTTAT GCTTCACTTT GTCTGCCCTT TATTTTGACA CCTAGGGAAC TGCATTTACC CAATCTCTGT CGAGCAAGTC
AAAGAAGAAG AAGTAGATAA GCAAATTCTC ACGTTCAGCC ACACAAGACT GTGCCATGGA ATACAGAATC ATGTTACTGA
CTAGGTTTGA GTTTAAGAGA GCACGACCAA GTAGCTGTGA AATTTTGGCT GAAAGATCTA GCTTTCTGTT GTAGCTTAAG
ACTTTTTACG TTTCTCCATT CGAATGAAGT TGAGTTTTTT TTTGTTCTAA ACTAACAAGG ATTTGAATTA GGAATGATAC
AACTTTTGCG ATACGGCAGA GTTTTCATTA GATAATGTTC ATTTTGTTTT ACGTACATTT TTGTGTTTAC TGTCATCTTA
AGATGCTCTT TGGAACCGTA TAACATAGTA AGGAAGAACA CTCCTTCCAA AGTTGGCATC TTGATTTTAA TTCAACATAA
AAACGACATT TTGG

>Vigan.06G243800.01
ATGGCCTCCA TCCACAAATT TTTGCTTTTC TCTCTCGCCC TTCTCCTCTT CGCTTCTCCT TTTCTCCAAG TTGCTAGGTG
TCAGTCAGAC TCCGATGATG CTGTGGATAA CATTGAAGAA TCAAGCGATA TTGGCATTGT TGGGGATGAT GCCCAAGACT
TTGGTGATGG GACCTTGTCT TCCGCTCCAG GAATTGATAC AATAAGTGTA TTTCCAAAAA ACAGCGCACG ATTGATAACA
GCTGGAGAAG AGTCAGAGCT GCTTGTTGGT GTTAAAAATG ATGGGGATTC AAGCTTGAAT GTTATTGCAA TCAGGGCTAG
TATTCACCTT CCTTTTGATC ACAAGCTGCT GGTTCAAAAT CTTACTACCC AGGGTTTCAA TAATGGTTCT GTACCAGCCT
CAGCACAGGC TACTTTCCCA TATTTATTTG CAGTCAGTAA GTTCATGCAG CCTGGAAATT TTGATCTTGT GGGCACTATT
ATTTATGAGA TAGATGATCA TCCATTCCAA AGCGTCTTCT TTAATGGCAC TGTTGAAGTT GCTGAAGCTG GTGGTTTTCT
TAGCATGGAG TCTGTTTTTC TTGTTACACT GGGGGCTGCT CTCCTTGTCC TCCTGGGGCT ATGGATTCAT GGTCAAATAC
AACACCTTTC TAAGAAAACA AAGAGGGCTC CAAAAGTTGA AGTGGGAACA AGGTCTACAG ATGCTTCAAC TGATGAATGG
CTACAGGTTT GTTCTTATGC CTTGTACTAT ACTTGTTGGA TTTCATGTTT GATGCTTTAA 

>Vigan.06G243800.01
MASIHKFLLF SLALLLFASP FLQVARCQSD SDDAVDNIEE SSDIGIVGDD AQDFGDGTLS SAPGIDTISV FPKNSARLIT
AGEESELLVG VKNDGDSSLN VIAIRASIHL PFDHKLLVQN LTTQGFNNGS VPASAQATFP YLFAVSKFMQ PGNFDLVGTI
IYEIDDHPFQ SVFFNGTVEV AEAGGFLSME SVFLVTLGAA LLVLLGLWIH GQIQHLSKKT KRAPKVEVGT RSTDASTDEW
LQVCSYALYY TCWISCLML*