GBrowse Details

Vigan.06G245600.01

Basic Information:
Name: Vigan.06G245600.01
Multiple alignment
Variant Information
Position: Chr06:36989536..36991769 (+ strand)
Length: 2234
Functional Information:
Description: Similar to Uncharacterized protein. [I1LPF0, Glycine max]
GO: Biological Process: sexual reproduction (GO:0019953)
Cellular Component: extracellular region (GO:0005576)
InterPro: Major pollen allergen Lol pI (IPR005795)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.14,68.79,14.29,8.54,34.75,189.93,19.90,21.61
Arabidopsis thaliana homolog: AT3G45970.1
Automatic updates:
Name: NM_001251264 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative expansin-like A2 (LOC100305884), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36989536..36990148 (+ strand)
Length: 613
Type: five_prime_UTR
Position: Chr06:36990149..36990263 (+ strand)
Length: 115
Type: CDS
Position: Chr06:36990374..36990483 (+ strand)
Length: 110
Type: CDS
Position: Chr06:36990612..36990790 (+ strand)
Length: 179
Type: CDS
Position: Chr06:36991131..36991263 (+ strand)
Length: 133
Type: CDS
Position: Chr06:36991352..36991597 (+ strand)
Length: 246
Type: CDS
Position: Chr06:36991598..36991769 (+ strand)
Length: 172
Type: three_prime_UTR


>Vigan.06G245600.01
GTAATCAGAA GACAGTAAAA GAAAACCAGC GGAAGTGTGA AAAAGGTTTT GGCAGCAAAA ACATTATGAT ACCTCGTAAT
CAATCGATGT CCATCTCCGT CTATAGTAAC AGTTAAAAAG AAAGAGAAGA ACACGTCGTA GCAGTCACCA ACAACAGCTG
TTTGATATTG GCGCATAGAG ATATGCAGAG TCGGTGAGTG CTGTCAGAAA GTGGCCCCAT TTACTTTCTT TCTGCTGCCG
CGTTAAGTAA GTGCGTTTAC CCTTTTTCTC ATTACCAAAC ATGACTTTAA TCTATATATA ATTCTATTTT CAATTCAATA
AATTTATTAC TTTTGTATAA TATTCAATTT TAATAAATTT ATAGTGTTCA TCTTTCAAAC TCAGATTTTC AAACAGATTC
ATCCTTATCA GTTACAAAGC CCTTTTGAGA AATCTGACGT GTGACCAATT TATCGGTATT CCTCTCAAAC TTTCCCTATA
TATATATATA TATATATATA TATATATATA TATACGTTCT TCCCCTTCCT TTCTCAACCA ACCACTTCAA CTTACTGAGT
CATCTCAGAA CGATAAAAAA TCCAACACAT TGCATACTGT AACACACACA TACATGGCTT TCCTTCTTCT CTTTCTCCTC
TCCCTTCTCG CTTCTTCTGC CACTGCCTGC GATCGCTGCC TGCATCAGTC CAAGGCTTCC TATTTCTCCA AAGCTTCTGT
TCTTTCATCT GGGGCATGTG GGTATGGGTC TCAGGCACTG GACTTCAGTG GTGGAAACCT TGCAGCCGGT GTGGCCTCTC
TCTTCAAAGA CGGAGCCGGT TGTGGTGGCT GCTTTCAGAT AAGATGCAAG AACCCAAGTG TTTGCAGCAA ACTGGGTACT
ACGGTGGTGT TGACTGATCT CAATCGCAAC AATGAAACTG ACTTTGTGCT CAGCAGCAGA GCTTTCTCAG GCATGGCTCA
GAAGGGCAAG GGCAAAGAAA TATTGAAACT TGGCATTGTT GACATTGAAT ACAAGAGAGT ACCCTGTGTT TACAAAAATC
AGAATTTGGC GGTCCGTGTG GAAGAATCAA GCAAGAAGCC AGATTATTTA GCAGTAAAAT TTTTGTACCA AGGAGGTCAA
ACAGAGATTG TGGGCGTTGA TGTGGCTCAG GTGGGGTCTG CGAATTGGAG TTTCATGAGC AGAAACCACG GTGCAGTGTG
GGACACGAGT AGGGTACCAA AAGGTGCATT GCAGTTTCGT TTTGTGGTCA CAGCAGGGTA TGATGGGAAG TGGATTTGGG
CAAAGAAGGT TCTACCTGCT GATTGGAAAA ATGGTGTGAT ATATGATTCT GGGGTTCAGA TAACAGACAT TGCACAAGAG
GGTTGCTTCC CTTGTGATGA TTCCACCTGG TCATGATTCA TTGCAACTCT ATATAACCTA CCTACACATA CACACATACT
CTAAGTCATA CTGAGAAATC ATGGAGTAGC TTAATTCAAT AAAATTTTTA AAACATTCTT ATTTCTCTCT ACTTCTTCAC
TTTCTATTCT TTCTTGTGTT CTTGTTGTAA GTTGCAGCCA GCCAAAAT

>Vigan.06G245600.01
ATGGCTTTCC TTCTTCTCTT TCTCCTCTCC CTTCTCGCTT CTTCTGCCAC TGCCTGCGAT CGCTGCCTGC ATCAGTCCAA
GGCTTCCTAT TTCTCCAAAG CTTCTGTTCT TTCATCTGGG GCATGTGGGT ATGGGTCTCA GGCACTGGAC TTCAGTGGTG
GAAACCTTGC AGCCGGTGTG GCCTCTCTCT TCAAAGACGG AGCCGGTTGT GGTGGCTGCT TTCAGATAAG ATGCAAGAAC
CCAAGTGTTT GCAGCAAACT GGGTACTACG GTGGTGTTGA CTGATCTCAA TCGCAACAAT GAAACTGACT TTGTGCTCAG
CAGCAGAGCT TTCTCAGGCA TGGCTCAGAA GGGCAAGGGC AAAGAAATAT TGAAACTTGG CATTGTTGAC ATTGAATACA
AGAGAGTACC CTGTGTTTAC AAAAATCAGA ATTTGGCGGT CCGTGTGGAA GAATCAAGCA AGAAGCCAGA TTATTTAGCA
GTAAAATTTT TGTACCAAGG AGGTCAAACA GAGATTGTGG GCGTTGATGT GGCTCAGGTG GGGTCTGCGA ATTGGAGTTT
CATGAGCAGA AACCACGGTG CAGTGTGGGA CACGAGTAGG GTACCAAAAG GTGCATTGCA GTTTCGTTTT GTGGTCACAG
CAGGGTATGA TGGGAAGTGG ATTTGGGCAA AGAAGGTTCT ACCTGCTGAT TGGAAAAATG GTGTGATATA TGATTCTGGG
GTTCAGATAA CAGACATTGC ACAAGAGGGT TGCTTCCCTT GTGATGATTC CACCTGGTCA TGA

>Vigan.06G245600.01
MAFLLLFLLS LLASSATACD RCLHQSKASY FSKASVLSSG ACGYGSQALD FSGGNLAAGV ASLFKDGAGC GGCFQIRCKN
PSVCSKLGTT VVLTDLNRNN ETDFVLSSRA FSGMAQKGKG KEILKLGIVD IEYKRVPCVY KNQNLAVRVE ESSKKPDYLA
VKFLYQGGQT EIVGVDVAQV GSANWSFMSR NHGAVWDTSR VPKGALQFRF VVTAGYDGKW IWAKKVLPAD WKNGVIYDSG
VQITDIAQEG CFPCDDSTWS *