GBrowse Details

Vigan.06G245700.01

Basic Information:
Name: Vigan.06G245700.01
Multiple alignment
Variant Information
Position: Chr06:37007670..37009378 (+ strand)
Length: 1709
Functional Information:
Description: Similar to NAC6 protein. [Q52QR0, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.43,2.31,4.51,27.14,11.30,4.67,3.93,15.83
Arabidopsis thaliana homolog: AT2G17040.1
Automatic updates:
Name: BT098651 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-23E20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249971 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC domain protein NAC6 (NAC6), mRNA.
PubMed ID: 21943253 NCBI(pubmed)
16919368 NCBI(pubmed)
Status: Known Variant
Name: NM_001255461 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC domain-containing protein (LOC100816770), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37007670..37007912 (+ strand)
Length: 243
Type: five_prime_UTR
Position: Chr06:37007913..37008093 (+ strand)
Length: 181
Type: CDS
Position: Chr06:37008184..37008452 (+ strand)
Length: 269
Type: CDS
Position: Chr06:37008676..37009116 (+ strand)
Length: 441
Type: CDS
Position: Chr06:37009117..37009378 (+ strand)
Length: 262
Type: three_prime_UTR


>Vigan.06G245700.01
TTTTGTGCCT CAAATGCCTC CACGACCAAG TCATACCCCC AAACCTTAGT AATATTACAT CGTAAATAAT GAAAAAACAT
AGTTAAAGCC ACAGTTGTGA AACCAACCAT GCAGCATAGC TTATAAATAC CCTTCAATCA CATTCATTTC AGTGTATCAA
CCACCTTCGT GTTCCTCTGA GAAAAATATA ACCACTGCAC TAGCTTAACA GCACGTAGTC ACATAAGCAA CTAAATTGAT
GATATGGCCA CCATGGAAGA CATGAGCATG AGTGGGGAAA TTGCACTTCC TGGCTTCCGA TTCCACCCCA CAGAGGAAGA
GCTTCTGGAT TTCTATCTTA AGAACATGGT TGTTGGCAAG AAACTCCGTT ACGACGTTAT TGGTTTCCTC AACATCTATC
ACCATGATCC TTGGGACTTA CCTGATTTAG CTAAGGTTGG GGAGAGAGAA TGGTACTTCT TCGTGCCGAG GGACAAGAAG
CATGGAAGCG GAGGAAGGCC AAACCGGACC ACCGAGAAAG GGTTTTGGAA AGCAACCGGT TCGGACCGGA AAATAGTGAC
TCTGTCTGAT CCCAAACGCA TAATCGGGTT AAGGAAGACC CTGGTTTTCT ACATGGGAAG AGCTCCCAGT GGCCGCAAAA
CCGATTGGGT CATGAATGAG TACCGTTTAC CTGACAATTG CAAATTACCC AAGGAAATAG TGTTGTGCAA GATATATCGA
AAGGCAACTT CGTTGAAAGT GCTGGAGGAA AGAGCAGAGA GAGAGATGAA GCAAATGGTG GGATCCCCTG CTTCTCCTCC
TTCATCGACG GACACCATGT CCTTCAGCAG CCCACAGGAA GAGGCAAACG TGCCCTTGCC TCTGCCCTTG TTGCAGCATG
TTCTTAAGAA AGAGTCTGAA TCTGAAGAAA CAATGGCATG TGTAGTGCCT AAACAAGAGA AAACAAGCAG CAGCAACAAC
AACAACAAAG GCAGTTGTGG GGCATCTTCC CTACAAATGC CCTTTGGGAA GGACAATCTT CCGGACCTGC AGCTTCCCAT
GTTGACAGAT TGGACCCAAG ATACCTTCTG GGCTCAGTTG AATAGTCCAT GGCTCCAAAA CTTAACTCCT TCCAACATCT
TAAACTTTTA CTGACTCCAC ACATAATCAA TCTCTATGTG TATCAACTGC AACTTCAAGT CAATCACTTC TTATTATTAC
TACCTATTTA TTTATTTTCG AATGTATATG CACTTAGTTA ATCAATTAAT CAGTTAATTA ATATCGTATT AACTCCACAG
CTTTTCCTGC AAATACGTGT TTTCCTCCAT TTCTGCATAT CTGCAACCTC TTCTTTGATC ATATTTCACT GTCATTGAAT
GTTCAAGTCA ATTTTCATTA CCTTATTGGA GATATG

>Vigan.06G245700.01
ATGGCCACCA TGGAAGACAT GAGCATGAGT GGGGAAATTG CACTTCCTGG CTTCCGATTC CACCCCACAG AGGAAGAGCT
TCTGGATTTC TATCTTAAGA ACATGGTTGT TGGCAAGAAA CTCCGTTACG ACGTTATTGG TTTCCTCAAC ATCTATCACC
ATGATCCTTG GGACTTACCT GATTTAGCTA AGGTTGGGGA GAGAGAATGG TACTTCTTCG TGCCGAGGGA CAAGAAGCAT
GGAAGCGGAG GAAGGCCAAA CCGGACCACC GAGAAAGGGT TTTGGAAAGC AACCGGTTCG GACCGGAAAA TAGTGACTCT
GTCTGATCCC AAACGCATAA TCGGGTTAAG GAAGACCCTG GTTTTCTACA TGGGAAGAGC TCCCAGTGGC CGCAAAACCG
ATTGGGTCAT GAATGAGTAC CGTTTACCTG ACAATTGCAA ATTACCCAAG GAAATAGTGT TGTGCAAGAT ATATCGAAAG
GCAACTTCGT TGAAAGTGCT GGAGGAAAGA GCAGAGAGAG AGATGAAGCA AATGGTGGGA TCCCCTGCTT CTCCTCCTTC
ATCGACGGAC ACCATGTCCT TCAGCAGCCC ACAGGAAGAG GCAAACGTGC CCTTGCCTCT GCCCTTGTTG CAGCATGTTC
TTAAGAAAGA GTCTGAATCT GAAGAAACAA TGGCATGTGT AGTGCCTAAA CAAGAGAAAA CAAGCAGCAG CAACAACAAC
AACAAAGGCA GTTGTGGGGC ATCTTCCCTA CAAATGCCCT TTGGGAAGGA CAATCTTCCG GACCTGCAGC TTCCCATGTT
GACAGATTGG ACCCAAGATA CCTTCTGGGC TCAGTTGAAT AGTCCATGGC TCCAAAACTT AACTCCTTCC AACATCTTAA
ACTTTTACTG A

>Vigan.06G245700.01
MATMEDMSMS GEIALPGFRF HPTEEELLDF YLKNMVVGKK LRYDVIGFLN IYHHDPWDLP DLAKVGEREW YFFVPRDKKH
GSGGRPNRTT EKGFWKATGS DRKIVTLSDP KRIIGLRKTL VFYMGRAPSG RKTDWVMNEY RLPDNCKLPK EIVLCKIYRK
ATSLKVLEER AEREMKQMVG SPASPPSSTD TMSFSSPQEE ANVPLPLPLL QHVLKKESES EETMACVVPK QEKTSSSNNN
NKGSCGASSL QMPFGKDNLP DLQLPMLTDW TQDTFWAQLN SPWLQNLTPS NILNFY*