VIGGS:GBrowse

Vigan.06G247900.01

Basic Information:

Name:	Vigan.06G247900.01 Multiple alignment Variant Information
Position:	Chr06:37220867..37224576 (- strand)
Length:	3710

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LIK7, Glycine max]
GO:	Biological Process: biotin biosynthetic process (GO:0009102)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: biotin synthase activity (GO:0004076)
	Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro:	Biotin synthase/Biotin biosynthesis bifunctional protein BioAB (IPR002684)
	Elongator protein 3/MiaB/NifB (IPR006638)
	Radical SAM (IPR007197)
	Biotin and thiamin synthesis-associated domain (IPR010722)
	Aldolase-type TIM barrel (IPR013785)
	Biotin synthase (IPR024177)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.16,3.24,25.82,25.90,19.95,29.09,10.88,23.76
Arabidopsis thaliana homolog:	AT2G43360.1

Automatic updates:

Name:	NM_001250298 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max biotin synthase (LOC732577), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:37220867..37221253 (- strand)
Length:	387
Type:	three_prime_UTR

Position:	Chr06:37221254..37221553 (- strand)
Length:	300
Type:	CDS

Position:	Chr06:37221934..37222073 (- strand)
Length:	140
Type:	CDS

Position:	Chr06:37222856..37223061 (- strand)
Length:	206
Type:	CDS

Position:	Chr06:37223252..37223358 (- strand)
Length:	107
Type:	CDS

Position:	Chr06:37223567..37223746 (- strand)
Length:	180
Type:	CDS

Position:	Chr06:37224134..37224325 (- strand)
Length:	192
Type:	CDS

Position:	Chr06:37224326..37224576 (- strand)
Length:	251
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G247900.01
TCCCTCTGTA GTTGGAAGAG AGAGGGAATG AGTCATCACT CAAGGCCGCC AAACAAACAC TCACACTATA AACTCCGGAG
TCCCAATTTT TAAGGAAACC AAAACCAAAG CAAAACTTCT TCTCTGTTCT TTCCGACCTC TTAATATTCG CAGATCTCTA
TAATATTTTT CGATCTACAT TCTCTCTTCT GTTGTCGTTG GAGCTAAAAC TGAGATTTGT ATTGCCCATC TTTGAATTCC
AAAGCAAAAA CATGTTTTTG GTGAGACCCA TTTTCCGAGG ACCCTCCCTC TGGGCGTTGC ACTCTTCCCA TGCTTGTTTC
TCTGCCTCAG CGGCTGCAGT TCAAGCTGAG AGAACCATCA AAGATGGGCC AAGAAACGAT TGGAGCCGAG ACGAAGTCAA
ATCCATCTAC GACTCTCCCA TTTTCGATCT TCTCTTTCAC GGGGCTCAAG TTCACAGACA TGCGCATAAC TTCAGGGAAG
TTCAGCAATG TACTCTTCTG TCTATCAAAA CAGGAGGGTG CAGTGAAGAT TGTTCTTATT GTCCTCAATC ATCTAAGTAT
AATACCGGAA TCAAGGGCCA ACGCCTTATG AACAAGGAAG CTGTTCTAGA GTCTGCAAAG CGGGCAAAAG AGGCTGGGAG
CACTCGCTTT TGTATGGGTG CTGCGTGGAG AGATACACTG GGAAGAAAGA CCAACTTCAA CCAGATCCTT GAATATGTGA
AAGACATTAG GGAAATGGGG ATGGAGGTTT GTTGTACCCT TGGCATGCTG GAGAAACAGC AGGCTCTTGA ACTCAAGAAG
GCAGGTCTCA CTGCCTATAA TCACAATCTT GACACCTCAA GAGAATATTA TCCAAACATC ATCACAACAA GGAGTTATGA
TGAGCGCCTA AAAACACTTG AGTTTGTTCG TGATGCAGGG ATCAATGTCT GTTCTGGAGG AATTATAGGA CTTGGAGAAG
CAGAGGAGGA CCGTGTAGGT TTGTTACATA CATTGTCAAC ACTTCCCACC CATCCTGAGA GTGTTCCTAT TAATGCACTT
GTTGCTGTGA AGGGAACCCC ACTTGAGAAT CAAAAGCCTG TTGAAATATG GGAGATGATT CGCATGATAG CCACAGCACG
TATAATAATG CCAAAATCAA TGGTCAGGCT ATCTGCTGGC AGAGTCCGGT TCTCCATGCC TGAACAGGCA TTGTGTTTTC
TTGCTGGTGC AAATTCCATA TTCACTGGTG AAAAGCTTCT CACTACACCT AACAATGACT TTGATGCTGA TCAACTCATG
TTCAAAGTTC TTGGACTTCT ACCAAAAGCT CCAAGCTTTA ATGAAGGTGA AACTAGTGAG ACAGAAGATT ATAAGGAAGC
AGCTTCTTCT AGTTGAGCTG GTCAATCTAC GATCCTTCAG CCTCTGTTAC TGCTAATTAG CATGTACTTG ATGTTAGGTT
TCATTGAGCT CGTCGTCTAT ACTCATATTT GACGACATGA ACTCCCAAGA ACTAAACATA AATGTTGAAA ACATTTATTT
TTGCCATAAC TAGGCTTTGT CAAGCATAAA ATTCATGAGT GGAGTAAAAG TTGACATAGT TTTCTGCATC CTCAGTCTAA
AAAAGTGACT CTTTTCTAGT GATTATTGCC TTTTTTTGGT TGGTAGGTTG TTGGAGATTT TTCAAAAAGA TCCTCTAAAA
TGGGTTATCA TCGTGTTCTC TCTGAGATCA ACATTTGTAG TTTAAATTTG AATAAAACTT TAGGGATGTT TACCAGCGTT
TTA

[show][hide][copy]CDS

>Vigan.06G247900.01
ATGTTTTTGG TGAGACCCAT TTTCCGAGGA CCCTCCCTCT GGGCGTTGCA CTCTTCCCAT GCTTGTTTCT CTGCCTCAGC
GGCTGCAGTT CAAGCTGAGA GAACCATCAA AGATGGGCCA AGAAACGATT GGAGCCGAGA CGAAGTCAAA TCCATCTACG
ACTCTCCCAT TTTCGATCTT CTCTTTCACG GGGCTCAAGT TCACAGACAT GCGCATAACT TCAGGGAAGT TCAGCAATGT
ACTCTTCTGT CTATCAAAAC AGGAGGGTGC AGTGAAGATT GTTCTTATTG TCCTCAATCA TCTAAGTATA ATACCGGAAT
CAAGGGCCAA CGCCTTATGA ACAAGGAAGC TGTTCTAGAG TCTGCAAAGC GGGCAAAAGA GGCTGGGAGC ACTCGCTTTT
GTATGGGTGC TGCGTGGAGA GATACACTGG GAAGAAAGAC CAACTTCAAC CAGATCCTTG AATATGTGAA AGACATTAGG
GAAATGGGGA TGGAGGTTTG TTGTACCCTT GGCATGCTGG AGAAACAGCA GGCTCTTGAA CTCAAGAAGG CAGGTCTCAC
TGCCTATAAT CACAATCTTG ACACCTCAAG AGAATATTAT CCAAACATCA TCACAACAAG GAGTTATGAT GAGCGCCTAA
AAACACTTGA GTTTGTTCGT GATGCAGGGA TCAATGTCTG TTCTGGAGGA ATTATAGGAC TTGGAGAAGC AGAGGAGGAC
CGTGTAGGTT TGTTACATAC ATTGTCAACA CTTCCCACCC ATCCTGAGAG TGTTCCTATT AATGCACTTG TTGCTGTGAA
GGGAACCCCA CTTGAGAATC AAAAGCCTGT TGAAATATGG GAGATGATTC GCATGATAGC CACAGCACGT ATAATAATGC
CAAAATCAAT GGTCAGGCTA TCTGCTGGCA GAGTCCGGTT CTCCATGCCT GAACAGGCAT TGTGTTTTCT TGCTGGTGCA
AATTCCATAT TCACTGGTGA AAAGCTTCTC ACTACACCTA ACAATGACTT TGATGCTGAT CAACTCATGT TCAAAGTTCT
TGGACTTCTA CCAAAAGCTC CAAGCTTTAA TGAAGGTGAA ACTAGTGAGA CAGAAGATTA TAAGGAAGCA GCTTCTTCTA
GTTGA

[show][hide][copy]PROTEIN

>Vigan.06G247900.01
MFLVRPIFRG PSLWALHSSH ACFSASAAAV QAERTIKDGP RNDWSRDEVK SIYDSPIFDL LFHGAQVHRH AHNFREVQQC
TLLSIKTGGC SEDCSYCPQS SKYNTGIKGQ RLMNKEAVLE SAKRAKEAGS TRFCMGAAWR DTLGRKTNFN QILEYVKDIR
EMGMEVCCTL GMLEKQQALE LKKAGLTAYN HNLDTSREYY PNIITTRSYD ERLKTLEFVR DAGINVCSGG IIGLGEAEED
RVGLLHTLST LPTHPESVPI NALVAVKGTP LENQKPVEIW EMIRMIATAR IIMPKSMVRL SAGRVRFSMP EQALCFLAGA
NSIFTGEKLL TTPNNDFDAD QLMFKVLGLL PKAPSFNEGE TSETEDYKEA ASSS*