GBrowse Details

Vigan.06G248100.01

Basic Information:
Name: Vigan.06G248100.01
Multiple alignment
Variant Information
Position: Chr06:37232342..37239449 (+ strand)
Length: 7108
Functional Information:
Description: Similar to Uncharacterized protein. [I1LIK4, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ATPase activity (GO:0016887)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: ABC transporter-like (IPR003439)
AAA+ ATPase domain (IPR003593)
ABC-2 type transporter (IPR013525)
ABC transporter, conserved site (IPR017871)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.53,5.25,29.12,25.46,0.05,13.63,0.21,23.46
Arabidopsis thaliana homolog: AT1G17840.1, AT1G51460.1, AT1G51500.1, AT3G21090.1
Automatic updates:
Name: MT533596 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula ATP-binding cassette transporter G family member 12 (ABCG12) mRNA, complete cds.
PubMed ID: 32690757 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:37232342..37232474 (+ strand)
Length: 133
Type: five_prime_UTR
Position: Chr06:37232475..37232751 (+ strand)
Length: 277
Type: CDS
Position: Chr06:37235030..37235109 (+ strand)
Length: 80
Type: CDS
Position: Chr06:37235796..37236257 (+ strand)
Length: 462
Type: CDS
Position: Chr06:37236498..37236620 (+ strand)
Length: 123
Type: CDS
Position: Chr06:37237185..37237316 (+ strand)
Length: 132
Type: CDS
Position: Chr06:37237448..37237732 (+ strand)
Length: 285
Type: CDS
Position: Chr06:37237991..37238263 (+ strand)
Length: 273
Type: CDS
Position: Chr06:37238373..37238480 (+ strand)
Length: 108
Type: CDS
Position: Chr06:37238825..37239181 (+ strand)
Length: 357
Type: CDS
Position: Chr06:37239182..37239449 (+ strand)
Length: 268
Type: three_prime_UTR


>Vigan.06G248100.01
TTGTTGCCAA TCAATCTATC TGTGTTTTCT TTTTCTTCCT ATAACACCTA TCTATCTATC TTCCTTAACT TCATTTTATG
TGAAGTTCCA ATCTTTTTAG GTCAAACTTC CATATCTGTA GCTGCATATC ACCATGGAGA TTGAGGCAGC AGCAGCAGCC
ACCGACCGGA ACAAAGGCTT CAACTGGGGT GCTGCTGCTA CTGAAACTCA GAGGGATCTC CCATACACGG GCTTTGACAG
AGGAAGCTTC TTGGCTTGGC AAGATCTCAG AGTTGTGCTT CCAAACTTTG GAAAAGGACC CACCAAGAGA TTGCTCAATG
GCCTCAATGG CTATGCTGAG CCTGGCCGAA TCATGGCCAT CATGGGTCCT TCTGGCTCTG GAAAATCTAC CCTTCTTGAT
GCACTTGCAG GTAGACTCTC AAAAAATGTG GTTATGACAG GAAATGTTCT TCTAAATGGG AAGAAAAAAA GCCTAGGTTA
CGGCGGTGTT GCGTACGTAA CTCAAGAGGA TGTGCTTCTG GGAACTCTTA CTGTGAAGGA AACTGTATCC TACTCGGCCC
ATCTACGTCT TCCAACATCA ATGAGCAAAG AAGAAGTTAA CAGCTTGGTG GATGGAACAA TCATAGAAAT GGGTCTCCAA
GATTGTGCTG ATAGGTTGAT TGGTAACTGG CACTTGAGAG GTATAAGTGG AGGGGAGAAG AAGAGGCTTA GCATTGCACT
TGAGATCCTT ACAATGCCTC GTTTACTGTT CCTTGATGAA CCCACCAGTG GCCTTGACAG TGCCTCTGCA TTTTTTGTCG
TTCAAACTCT CAGAAATGTT GCTCGTGATG GAAGAACTGT TATCTCTTCC ATTCACCAGC CCAGCAGTGA AGTCTTTACA
CTCTTTGATG ACCTTTTCTT GCTATCTGGC GGTGAAACAG TTTATTTTGG AGAAGCAAAA TCTGCAATTG AGTTTTTTGC
TGAAGCTGGT TTCCCTTGTC CACGTAAAAG AAATCCTTCT GATCACTTCC TACGATGCAT CAATTCTGAT TTCGACATTG
TTACAGCTAC GTTGAAGGGA TCTCAGAGAA TTCATGATGT TCCAAACTCA GCTGATCCTT TCATGAATTT GGCTACAGCA
GAGATTAAGT CAATGCTAGT TGAGAAATAT AGGCGTTCGG CATATGCCAG AAGGGCAAAG ACCAGAATTC AAGAACTATC
TACAGACGAA GGGCTTCAAC CTCAGACACA AAATGGAAGT CAAGCTAGTT GGTGGAAGCA ACTCTCAACT TTGACAAAGA
GATCATTTGT GAACATGTGC AGAGATGTGG GGTACTACTG GTTGAGGATC ATAATTTACA TCATTGTGTC CATATGTGTG
GGAACAGTTT ATTTTGACAT TGGCTACAGC TACACTTCCA TTCTGGCCCG TGGTGCCTGT GGTGCATTCA TATCAGGATT
TATGACATTC ATGTCAATTG GGGGCTTTCC ATCATTCATT GAAGAAATGA AGGTGTTTTA TCGAGAAAGG CTCAATGGAT
ACTATGGAGT TGCAGCATAT ATTTTAGCCA ATTTCCTTTC TTCTTTCCCA TTCTTGGTTG CTATTGCTCT TACTTCTAGC
ACCATCACCT ATAACATGGT GAAATTCAGG CCAGGGATAA GTCACTTTGT GTTCTTCACC TTCAACATCT ACAGCTGCAT
CTCAGTAATA GAGAGCCTCA TGATGGTTGT GGCTTCACTT GTTCCAAATT TCCTCATGGG AATAATTACA GGAGCTGGAA
TAATAGGAAT CATGATGATG ACCTCAGGAT TCTTCAGGTT GCTGTCTGAT CTTCCAAAAC CAGTTTGGCG CTACCCAATT
TCATATATCA GCTATGGTTC ATGGGCAATT CAGGGTGCAT ACAAGAATGA CTTGCTTGGG CTTGAGTTTG AGCCTCTGAT
ACCTGGTGAC AAAAAACTGA CTGGAGAATA CGTGATCACA CACATGTTAG GCATTGAATT AAACCATTCA AAGTGGTGGG
ATTTGGCAGC TCTATTTGTG ATTCTGTTGG CTTACAGACT TCTGTTCTTC ACTGTTCTGA AATTCAAGGA GAGAGCATCA
CCACTGTTTC AAACACTTTA TGCCAAGAGA ACAATCCAAC AGCTTGAAAA GAGACCCTCT TTCAGGAAGA TGCCATCTTT
CCCTTCTCAG AGGCATCAAC CCCTCCATTC ACTTTCTTCT CAAGATGGTC TTGATTCTCC ACTCAACTAA AATCCATCAC
CAACAAATAA AACTACTGCA TCTGGGTTTT CCAATTATTT TGCTTCATTA ACATACAAAA TTGTACTTGT TATCTGTTAT
AATCAGCATA TGTATAGGGA AAAATGTTTC ACAATCGTTT AAGCTACAAA ACAGACAAAT GGGACATGGC TAAGTCCTTC
AATTACTTTT TTTTTTGTTA CTTTCATTTA AAATCTCTAA ATTGGGATAT ATATAATTAC TTTGTACAAA ATGCAGTGCA
GGTATCTGCA GATCATGG

>Vigan.06G248100.01
ATGGAGATTG AGGCAGCAGC AGCAGCCACC GACCGGAACA AAGGCTTCAA CTGGGGTGCT GCTGCTACTG AAACTCAGAG
GGATCTCCCA TACACGGGCT TTGACAGAGG AAGCTTCTTG GCTTGGCAAG ATCTCAGAGT TGTGCTTCCA AACTTTGGAA
AAGGACCCAC CAAGAGATTG CTCAATGGCC TCAATGGCTA TGCTGAGCCT GGCCGAATCA TGGCCATCAT GGGTCCTTCT
GGCTCTGGAA AATCTACCCT TCTTGATGCA CTTGCAGGTA GACTCTCAAA AAATGTGGTT ATGACAGGAA ATGTTCTTCT
AAATGGGAAG AAAAAAAGCC TAGGTTACGG CGGTGTTGCG TACGTAACTC AAGAGGATGT GCTTCTGGGA ACTCTTACTG
TGAAGGAAAC TGTATCCTAC TCGGCCCATC TACGTCTTCC AACATCAATG AGCAAAGAAG AAGTTAACAG CTTGGTGGAT
GGAACAATCA TAGAAATGGG TCTCCAAGAT TGTGCTGATA GGTTGATTGG TAACTGGCAC TTGAGAGGTA TAAGTGGAGG
GGAGAAGAAG AGGCTTAGCA TTGCACTTGA GATCCTTACA ATGCCTCGTT TACTGTTCCT TGATGAACCC ACCAGTGGCC
TTGACAGTGC CTCTGCATTT TTTGTCGTTC AAACTCTCAG AAATGTTGCT CGTGATGGAA GAACTGTTAT CTCTTCCATT
CACCAGCCCA GCAGTGAAGT CTTTACACTC TTTGATGACC TTTTCTTGCT ATCTGGCGGT GAAACAGTTT ATTTTGGAGA
AGCAAAATCT GCAATTGAGT TTTTTGCTGA AGCTGGTTTC CCTTGTCCAC GTAAAAGAAA TCCTTCTGAT CACTTCCTAC
GATGCATCAA TTCTGATTTC GACATTGTTA CAGCTACGTT GAAGGGATCT CAGAGAATTC ATGATGTTCC AAACTCAGCT
GATCCTTTCA TGAATTTGGC TACAGCAGAG ATTAAGTCAA TGCTAGTTGA GAAATATAGG CGTTCGGCAT ATGCCAGAAG
GGCAAAGACC AGAATTCAAG AACTATCTAC AGACGAAGGG CTTCAACCTC AGACACAAAA TGGAAGTCAA GCTAGTTGGT
GGAAGCAACT CTCAACTTTG ACAAAGAGAT CATTTGTGAA CATGTGCAGA GATGTGGGGT ACTACTGGTT GAGGATCATA
ATTTACATCA TTGTGTCCAT ATGTGTGGGA ACAGTTTATT TTGACATTGG CTACAGCTAC ACTTCCATTC TGGCCCGTGG
TGCCTGTGGT GCATTCATAT CAGGATTTAT GACATTCATG TCAATTGGGG GCTTTCCATC ATTCATTGAA GAAATGAAGG
TGTTTTATCG AGAAAGGCTC AATGGATACT ATGGAGTTGC AGCATATATT TTAGCCAATT TCCTTTCTTC TTTCCCATTC
TTGGTTGCTA TTGCTCTTAC TTCTAGCACC ATCACCTATA ACATGGTGAA ATTCAGGCCA GGGATAAGTC ACTTTGTGTT
CTTCACCTTC AACATCTACA GCTGCATCTC AGTAATAGAG AGCCTCATGA TGGTTGTGGC TTCACTTGTT CCAAATTTCC
TCATGGGAAT AATTACAGGA GCTGGAATAA TAGGAATCAT GATGATGACC TCAGGATTCT TCAGGTTGCT GTCTGATCTT
CCAAAACCAG TTTGGCGCTA CCCAATTTCA TATATCAGCT ATGGTTCATG GGCAATTCAG GGTGCATACA AGAATGACTT
GCTTGGGCTT GAGTTTGAGC CTCTGATACC TGGTGACAAA AAACTGACTG GAGAATACGT GATCACACAC ATGTTAGGCA
TTGAATTAAA CCATTCAAAG TGGTGGGATT TGGCAGCTCT ATTTGTGATT CTGTTGGCTT ACAGACTTCT GTTCTTCACT
GTTCTGAAAT TCAAGGAGAG AGCATCACCA CTGTTTCAAA CACTTTATGC CAAGAGAACA ATCCAACAGC TTGAAAAGAG
ACCCTCTTTC AGGAAGATGC CATCTTTCCC TTCTCAGAGG CATCAACCCC TCCATTCACT TTCTTCTCAA GATGGTCTTG
ATTCTCCACT CAACTAA

>Vigan.06G248100.01
MEIEAAAAAT DRNKGFNWGA AATETQRDLP YTGFDRGSFL AWQDLRVVLP NFGKGPTKRL LNGLNGYAEP GRIMAIMGPS
GSGKSTLLDA LAGRLSKNVV MTGNVLLNGK KKSLGYGGVA YVTQEDVLLG TLTVKETVSY SAHLRLPTSM SKEEVNSLVD
GTIIEMGLQD CADRLIGNWH LRGISGGEKK RLSIALEILT MPRLLFLDEP TSGLDSASAF FVVQTLRNVA RDGRTVISSI
HQPSSEVFTL FDDLFLLSGG ETVYFGEAKS AIEFFAEAGF PCPRKRNPSD HFLRCINSDF DIVTATLKGS QRIHDVPNSA
DPFMNLATAE IKSMLVEKYR RSAYARRAKT RIQELSTDEG LQPQTQNGSQ ASWWKQLSTL TKRSFVNMCR DVGYYWLRII
IYIIVSICVG TVYFDIGYSY TSILARGACG AFISGFMTFM SIGGFPSFIE EMKVFYRERL NGYYGVAAYI LANFLSSFPF
LVAIALTSST ITYNMVKFRP GISHFVFFTF NIYSCISVIE SLMMVVASLV PNFLMGIITG AGIIGIMMMT SGFFRLLSDL
PKPVWRYPIS YISYGSWAIQ GAYKNDLLGL EFEPLIPGDK KLTGEYVITH MLGIELNHSK WWDLAALFVI LLAYRLLFFT
VLKFKERASP LFQTLYAKRT IQQLEKRPSF RKMPSFPSQR HQPLHSLSSQ DGLDSPLN*