GBrowse Details

Vigan.06G248900.01

Basic Information:
Name: Vigan.06G248900.01
Multiple alignment
Variant Information
Position: Chr06:37308007..37310237 (+ strand)
Length: 2231
Functional Information:
Description: Similar to Dihydroflavonol-4-reductase. [G7LEN2, Medicago truncatula]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.23,0.25,8.69,16.97,259.48,6.13,339.54,22.85
Arabidopsis thaliana homolog: AT1G51410.1
Automatic updates:
Name: NM_001255393 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like (LOC100809326), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37308007..37308165 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr06:37308166..37308283 (+ strand)
Length: 118
Type: CDS
Position: Chr06:37308423..37308592 (+ strand)
Length: 170
Type: CDS
Position: Chr06:37308716..37308907 (+ strand)
Length: 192
Type: CDS
Position: Chr06:37309238..37309400 (+ strand)
Length: 163
Type: CDS
Position: Chr06:37309632..37309818 (+ strand)
Length: 187
Type: CDS
Position: Chr06:37309919..37310063 (+ strand)
Length: 145
Type: CDS
Position: Chr06:37310064..37310237 (+ strand)
Length: 174
Type: three_prime_UTR


>Vigan.06G248900.01
ATAAAACACT TTTTAATAAA ATAACATTTA CGTTTTCAAA TAAACATAAA AGTTATATAT TTAATAAATA TATTCAGTCC
TCTTATATTT TTACTAATAA AATTTGAAGA AATCTATATA TAGGGAGATA GAAGATGAGT AGAATGAGTG GAAGGAAGCA
TGAGTAGTGA GGGAAAGTTG GTGTGTGTGA CTGGTGCTTC AGGGTACATT GCTTCATGGA TTGTGAAGTT CCTTCTTCAA
CGTGGTTACA CCGTCAGAGC CACTGTTCGC AACCCAAATA ATCTTCGAAA GGTAGAACAT TTGCTTAAAC TTGAAGGTGC
AGAGGAGAGA CTGCACCTGT TAAAGGCCGA TCTTTTGAGT GAAAATTCCT TTGACTCTAT TGTTGATGGT TGCGATGGAG
TTTTCCACAC TGCTTCTCCC TTTTTCAACA ACGTCAAAGA CCCACAGGCT GAACTGATTG ACCCTGCAGT GAAAGGAACT
CTAAATGTTC TTAAATCATG TGCGAAATCA TCATCTGTGA AACGAGTCGT TTTAACCTCT TCAGTGGCTG CTGTTGCATA
TAATGAAAGG CCTAAAACTC CGGAAGTTGT AGTTGATGAA ACATGGTTTT CAAATTCAGA TTATTGTAGG GAATTGAAGT
TGTGGTACCT ACTTTCAAAG ACATTGGCTG AGGAAGCTGC CTGGAAATTT TCCAAAGAGA ACAACCTTGA CTTAGTTTCT
GTTAACCCAG CAATGGTTGT CGGGCCACTG TTGCAAGCAG AGCTAAACAC TAGTGCTGCT ACAATTTTAA ACCTAATAGA
TGGTTCAGAA ACTTTTCCAA ATAGTACTTA CGGATGGATC AATGTGAAGG ATGTTGCAAA CGCTCATATC CAGGCTTATG
AGATTGCTTC TGCAAGTGGA AGATATTGTT TAGTTGAGAG AGTGGCACAT TTCTCCGAAC TCGCCAAGAT TTTGAAAGAT
CTATACCCAA CATATCAGAT TCCAGAAAAG TCTGCAGACG ATAAGCCCTA TGTACCAACA TTTCAGGTTT CCAAAGAAAA
GGCAAAATCA TTGGGGCTTG AATTTATTCC TTTAGAAGTG AGTCTTAAAG AGACCGTGGA AAGTTTGAAA GAAAAGAACT
TTGCCAACTT TTAACTTCTG ATCTCTCTCT ATGAACGAGT GAAGGATGAT AATCTCAACT GTGTTTCGTT ATTGATTCTG
GTTTTAAAAT TCCATGTTTG GAAATAAATT ATTGTTATGA ATGTAACAGT TCTAATGTGA TTCCTTGCTG GTTTTATTTC
GATTTGTACT CATAAAACAA GACTACAT

>Vigan.06G248900.01
ATGAGTAGTG AGGGAAAGTT GGTGTGTGTG ACTGGTGCTT CAGGGTACAT TGCTTCATGG ATTGTGAAGT TCCTTCTTCA
ACGTGGTTAC ACCGTCAGAG CCACTGTTCG CAACCCAAAT AATCTTCGAA AGGTAGAACA TTTGCTTAAA CTTGAAGGTG
CAGAGGAGAG ACTGCACCTG TTAAAGGCCG ATCTTTTGAG TGAAAATTCC TTTGACTCTA TTGTTGATGG TTGCGATGGA
GTTTTCCACA CTGCTTCTCC CTTTTTCAAC AACGTCAAAG ACCCACAGGC TGAACTGATT GACCCTGCAG TGAAAGGAAC
TCTAAATGTT CTTAAATCAT GTGCGAAATC ATCATCTGTG AAACGAGTCG TTTTAACCTC TTCAGTGGCT GCTGTTGCAT
ATAATGAAAG GCCTAAAACT CCGGAAGTTG TAGTTGATGA AACATGGTTT TCAAATTCAG ATTATTGTAG GGAATTGAAG
TTGTGGTACC TACTTTCAAA GACATTGGCT GAGGAAGCTG CCTGGAAATT TTCCAAAGAG AACAACCTTG ACTTAGTTTC
TGTTAACCCA GCAATGGTTG TCGGGCCACT GTTGCAAGCA GAGCTAAACA CTAGTGCTGC TACAATTTTA AACCTAATAG
ATGGTTCAGA AACTTTTCCA AATAGTACTT ACGGATGGAT CAATGTGAAG GATGTTGCAA ACGCTCATAT CCAGGCTTAT
GAGATTGCTT CTGCAAGTGG AAGATATTGT TTAGTTGAGA GAGTGGCACA TTTCTCCGAA CTCGCCAAGA TTTTGAAAGA
TCTATACCCA ACATATCAGA TTCCAGAAAA GTCTGCAGAC GATAAGCCCT ATGTACCAAC ATTTCAGGTT TCCAAAGAAA
AGGCAAAATC ATTGGGGCTT GAATTTATTC CTTTAGAAGT GAGTCTTAAA GAGACCGTGG AAAGTTTGAA AGAAAAGAAC
TTTGCCAACT TTTAA

>Vigan.06G248900.01
MSSEGKLVCV TGASGYIASW IVKFLLQRGY TVRATVRNPN NLRKVEHLLK LEGAEERLHL LKADLLSENS FDSIVDGCDG
VFHTASPFFN NVKDPQAELI DPAVKGTLNV LKSCAKSSSV KRVVLTSSVA AVAYNERPKT PEVVVDETWF SNSDYCRELK
LWYLLSKTLA EEAAWKFSKE NNLDLVSVNP AMVVGPLLQA ELNTSAATIL NLIDGSETFP NSTYGWINVK DVANAHIQAY
EIASASGRYC LVERVAHFSE LAKILKDLYP TYQIPEKSAD DKPYVPTFQV SKEKAKSLGL EFIPLEVSLK ETVESLKEKN
FANF*