GBrowse Details

Vigan.06G249900.01

Basic Information:
Name: Vigan.06G249900.01
Multiple alignment
Variant Information
Position: Chr06:37393475..37396007 (+ strand)
Length: 2533
Functional Information:
Description: Similar to Uncharacterized protein. [I1LP96, Glycine max]
InterPro: Proteasome maturation factor UMP1 (IPR008012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.32,64.39,77.53,56.97,158.42,151.99,86.72,69.97
Arabidopsis thaliana homolog: AT1G67250.1
Automatic updates:
Name: NM_001249113 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome maturation factor UMP1 family protein (LOC100500555), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37393475..37393592 (+ strand)
Length: 118
Type: five_prime_UTR
Position: Chr06:37393593..37393727 (+ strand)
Length: 135
Type: CDS
Position: Chr06:37393998..37394098 (+ strand)
Length: 101
Type: CDS
Position: Chr06:37394462..37394559 (+ strand)
Length: 98
Type: CDS
Position: Chr06:37395558..37395658 (+ strand)
Length: 101
Type: CDS
Position: Chr06:37395659..37396007 (+ strand)
Length: 349
Type: three_prime_UTR


>Vigan.06G249900.01
GTTTTTGGCG ACTGAGAAAT CCCTTTATAT AAAAGCCGTT CCTTTGCACG GTGGCTTCTT CATTCTTTTC TTGGTGAAGA
AAAAAGAACA CGAAGAACGA AGGTCGAAGA AGACGAACAT GGAAGACGCA TCTGCATCAA AGTACATCCC GCACCAGATC
GGAGGGCTCC AAAACGACTC GTTTCGATTC GGACTCGATG GAGTCAAAAG CGACATTGTT GGTTCTCACC CTCTCCAATC
GTCTCTCCAA TCCACAAGGA GGATGGAAGA AGCTATGAAG AGGCAATGTA AAGTTAATTT GTATGGAACT GCTTTTCCAC
TGAAGGAGGA GCTTGACAGG CAAATATTGT CTAGGTTCCA GCGGCCTCCT GGACCAATTC CATCTTCAAT GCTGGGCTTG
GAGACTGTTA CAGGAAGCAT TGATCACTTC GGTTTTGAGG ATTGTCTAAA TGACCCCCGT GACTCGGAGA CTTTCAGGCC
ATCCGACATG CATCATGGGA TGGAAGTTCG CCTTGGTCTG TCTAAGGGAC CAGTGTACCC AAGTATTATA TAATTAAATT
TGAGTTTTAT GGTAAAATCT TCTTGTTATT CATTAAAGAT GGAAGTGTCC AAGGAACCTA CATATGCAAT CATGGACTTA
TGTTTTCCTT TCGGTTTGGA TGCTACAAAT GTTATGGTCT ATATATTAAA CACAGCATGT CTTTCAGAGT AAATGCAGGC
GTTTGAGTTG AGCATCCTTG TCTCGGATTA TAATTTTATT CCCTTTTCAC CCGTTTTCAA TACTCCATGC GAAGGGAGTC
AATTTAGAAT GCATGGAATT AAGAGAAAAA GGCCTGTCAA TAATGTATAT AATGATAGGA AAATGGGATT AGAAATTTCG
AAATACGTTA AAAAAATATT CG

>Vigan.06G249900.01
ATGGAAGACG CATCTGCATC AAAGTACATC CCGCACCAGA TCGGAGGGCT CCAAAACGAC TCGTTTCGAT TCGGACTCGA
TGGAGTCAAA AGCGACATTG TTGGTTCTCA CCCTCTCCAA TCGTCTCTCC AATCCACAAG GAGGATGGAA GAAGCTATGA
AGAGGCAATG TAAAGTTAAT TTGTATGGAA CTGCTTTTCC ACTGAAGGAG GAGCTTGACA GGCAAATATT GTCTAGGTTC
CAGCGGCCTC CTGGACCAAT TCCATCTTCA ATGCTGGGCT TGGAGACTGT TACAGGAAGC ATTGATCACT TCGGTTTTGA
GGATTGTCTA AATGACCCCC GTGACTCGGA GACTTTCAGG CCATCCGACA TGCATCATGG GATGGAAGTT CGCCTTGGTC
TGTCTAAGGG ACCAGTGTAC CCAAGTATTA TATAA

>Vigan.06G249900.01
MEDASASKYI PHQIGGLQND SFRFGLDGVK SDIVGSHPLQ SSLQSTRRME EAMKRQCKVN LYGTAFPLKE ELDRQILSRF
QRPPGPIPSS MLGLETVTGS IDHFGFEDCL NDPRDSETFR PSDMHHGMEV RLGLSKGPVY PSII*