GBrowse Details

Vigan.06G250000.01

Basic Information:
Name: Vigan.06G250000.01
Multiple alignment
Variant Information
Position: Chr06:37398049..37401097 (+ strand)
Length: 3049
Functional Information:
Description: Similar to uncharacterized protein. [B8B1L7, Oryza sativa subsp. indica]
InterPro: Protein of unknown function DUF1218 (IPR009606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.65,4.90,9.67,3.42,4.41,16.52,14.56,5.97
Arabidopsis thaliana homolog: AT5G17210.1
Automatic updates:
Name: NM_001255361 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100787046 (LOC100787046), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37398049..37398179 (+ strand)
Length: 131
Type: five_prime_UTR
Position: Chr06:37398180..37398275 (+ strand)
Length: 96
Type: CDS
Position: Chr06:37398855..37399057 (+ strand)
Length: 203
Type: CDS
Position: Chr06:37400483..37400807 (+ strand)
Length: 325
Type: CDS
Position: Chr06:37400808..37401097 (+ strand)
Length: 290
Type: three_prime_UTR


>Vigan.06G250000.01
GCCTGGTGCA CGCTTCTTGT CCTCTTCCAT TCATCGCTGC TTACCAACTT TTCGTTTTCT CTTAATTAAC ATCACTCTCT
GAAAGAGACA CTTTCACTAT CTCTGTCAAC CAAATTCCAT TCGCAGAGAG AATGGAGAGA AAGGCTTTGA TAGTGTGCTG
CGTCGTTGGC TTCCTCGGAC TGTTGGCGGC TGCAACTAGC TTCGCTGCTG AAGCGACAAG GATTAAGGCT TCTCAAGTTC
ATTTTGTTTC TATCAATCAG TGCACGTATC CTCGAAGTCC TGCCATGGGT CTTGGTTTAA TTGCGGCTCT GGCTCTTATG
GTATCTCAAA TAATCATAAA TGTTGCAACT GGGTGTGTTT GTTGCAGAAG AAGTTCCCAA ATCCCAGATT CCAACTGGAA
GGTGGCACTG GCCTGCTTTG TTTTGTCCTG GTTCACATTT GTAATTGGTT TTCTGCTGTT GCTTACTGGT GCTGCACTGA
ATGATCAAAG AGGTGAAGAG AATGTGTACT TTGGGTACTA CTACTGCTAT GTGGTGAAAG CTGGAGTGTT TGCAGGGGGT
GCAATTTTAT CCCTTGCAAG TGCTGCATTT GGAATTGTGT ATTACATTTC CCTAACTGAG AAAAAGAATG CTATGCAATA
CCCATATCCC AACCAAGGGG TCATAGCCAT GGCACAACCT CAGATTCCAT CTCAGACTAA TCAAGATCCA GTCTTTGTGC
ATGAAGACAC ATACGTTAGA CGACAGTTCA CATGATTCCT ATTACTGCTT TAACCAAAAC CCTAATTCTA ATATTTAGGG
TTTGTATGTG CATATGCTTC ACTTTTGAGA GGGAAATTGT GCTTTTGGCT GTGTTTATAA TTGGATTTGT TAGAACTCTT
TAGCAGGAGT AGCTTTGGAT ATCATGTTTA AAGAGACCTA CAATTATGTA ACCTATAAGT ATCATCTTCT AACTTCAGAG
AATTAAAGTA TAAACTAAAC AATATTGTAA TATTTTACCT ATATCTCATA GCATCTTTTG GTGGCTTCCT GCACCCCACA
ATTTC

>Vigan.06G250000.01
ATGGAGAGAA AGGCTTTGAT AGTGTGCTGC GTCGTTGGCT TCCTCGGACT GTTGGCGGCT GCAACTAGCT TCGCTGCTGA
AGCGACAAGG ATTAAGGCTT CTCAAGTTCA TTTTGTTTCT ATCAATCAGT GCACGTATCC TCGAAGTCCT GCCATGGGTC
TTGGTTTAAT TGCGGCTCTG GCTCTTATGG TATCTCAAAT AATCATAAAT GTTGCAACTG GGTGTGTTTG TTGCAGAAGA
AGTTCCCAAA TCCCAGATTC CAACTGGAAG GTGGCACTGG CCTGCTTTGT TTTGTCCTGG TTCACATTTG TAATTGGTTT
TCTGCTGTTG CTTACTGGTG CTGCACTGAA TGATCAAAGA GGTGAAGAGA ATGTGTACTT TGGGTACTAC TACTGCTATG
TGGTGAAAGC TGGAGTGTTT GCAGGGGGTG CAATTTTATC CCTTGCAAGT GCTGCATTTG GAATTGTGTA TTACATTTCC
CTAACTGAGA AAAAGAATGC TATGCAATAC CCATATCCCA ACCAAGGGGT CATAGCCATG GCACAACCTC AGATTCCATC
TCAGACTAAT CAAGATCCAG TCTTTGTGCA TGAAGACACA TACGTTAGAC GACAGTTCAC ATGA

>Vigan.06G250000.01
MERKALIVCC VVGFLGLLAA ATSFAAEATR IKASQVHFVS INQCTYPRSP AMGLGLIAAL ALMVSQIIIN VATGCVCCRR
SSQIPDSNWK VALACFVLSW FTFVIGFLLL LTGAALNDQR GEENVYFGYY YCYVVKAGVF AGGAILSLAS AAFGIVYYIS
LTEKKNAMQY PYPNQGVIAM AQPQIPSQTN QDPVFVHEDT YVRRQFT*