VIGGS:GBrowse

Vigan.06G251400.01

Basic Information:

Name:	Vigan.06G251400.01 Multiple alignment Variant Information
Position:	Chr06:37502800..37505722 (+ strand)
Length:	2923

Functional Information:

Description:	Similar to NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like. [XP_004505603.1, Cicer arietinum]
InterPro:	Zinc finger, CHCC-type (IPR019401)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:161.84,62.62,61.92,48.84,82.32,138.61,100.45,49.58
Arabidopsis thaliana homolog:	AT3G03070.1

Automatic updates:

Name:	NM_001249322 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305499 (LOC100305499), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001349792 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max zinc-finger domain-containing protein (LOC100500382), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:37502800..37502969 (+ strand)
Length:	170
Type:	five_prime_UTR

Position:	Chr06:37502970..37503086 (+ strand)
Length:	117
Type:	CDS

Position:	Chr06:37505010..37505094 (+ strand)
Length:	85
Type:	CDS

Position:	Chr06:37505230..37505339 (+ strand)
Length:	110
Type:	CDS

Position:	Chr06:37505340..37505722 (+ strand)
Length:	383
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.06G251400.01
TGGCCCGATC ACTTCATGAA CATTCTGTGA CTGACTTGTG TTGTTTTTCG TACGGAGGGT GCGGGTTTCA ATAGAGAAAG
AACATAGAAT ACGATTTGCG ATTCCTTCAT CTCCCGTGTG ATTCATTGAT CTGATAATTG AGTTGTGTGA TCGAATTTAG
GGTTTGGGAG ATGGCGTCGA GTGTTTTGAG GAACCTCATG AGATTTTCGT CATCGAGGAA CACGAGCACG AGAAGTTTCA
GCCTCGTAAC CTCTCAAATC AGCAACCACA CCGCCAAGTG GATGCAGGAT ACAAGCAAGA AATCTCCGAT GGAGCTTATT
AATGAAGTTC CTCCAATTAA GGTTGAAGGC AGGATAGTTG CCTGTGAAGG AGATAGCAAT CCTGCACTCG GACACCCGAT
TGAATTCATA TGCCTTGACT TGCCCGAGCC AGCTATTTGC AAATATTGTG GCCTACGTTA TGTTCAGGAT CATCACCATT
AAGATTGGTT TCTCCGTGTA TTCTGGTGTG CATGTACGAA ATTTCTGCCT GTTTTTGGTT ACAATGCTTC TGACTAAATC
ATGGCGTAAC AAATATACTT CTTTGTTACA ATTTGCTAAA TAAGATGCTC ATGTACTATC TATTTTGTTG GGTTAACGTT
GTTAAGTGCA GTAAGTAATT GTGACCCGAG GTACAGCTTC ATTGAGCAAT CTATTTTATT TTAATTCTTA ATTTGCAAGC
TCCTGAGCCC TGGTTACACT ACCTTTTCAC AAGCCAAGAT AATGAATGTA AGAAGCAACA TTGAATGGTG TAAGAAGCTA
GATCATTAAA GTTGCCTTTG AGGTCCTAAT AAAGAAGAGA TTGTAAGAGA TTTTGGTATT CCAAA

[show][hide][copy]CDS

>Vigan.06G251400.01
ATGGCGTCGA GTGTTTTGAG GAACCTCATG AGATTTTCGT CATCGAGGAA CACGAGCACG AGAAGTTTCA GCCTCGTAAC
CTCTCAAATC AGCAACCACA CCGCCAAGTG GATGCAGGAT ACAAGCAAGA AATCTCCGAT GGAGCTTATT AATGAAGTTC
CTCCAATTAA GGTTGAAGGC AGGATAGTTG CCTGTGAAGG AGATAGCAAT CCTGCACTCG GACACCCGAT TGAATTCATA
TGCCTTGACT TGCCCGAGCC AGCTATTTGC AAATATTGTG GCCTACGTTA TGTTCAGGAT CATCACCATT AA

[show][hide][copy]PROTEIN

>Vigan.06G251400.01
MASSVLRNLM RFSSSRNTST RSFSLVTSQI SNHTAKWMQD TSKKSPMELI NEVPPIKVEG RIVACEGDSN PALGHPIEFI
CLDLPEPAIC KYCGLRYVQD HHH*