GBrowse Details

Vigan.06G254800.01

Basic Information:
Name: Vigan.06G254800.01
Multiple alignment
Variant Information
Position: Chr06:37728492..37732248 (+ strand)
Length: 3757
Functional Information:
Description: Similar to Gamma-tocopherol methyltransferase. [F8WRI3, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: methyltransferase activity (GO:0008168)
InterPro: Methyltransferase type 11 (IPR013216)
Tocopherol O-methyltransferase (IPR025774)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.15,12.01,15.28,4.32,4.34,5.30,14.87
Automatic updates:
Name: KM434769 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Bragg chloroplast gamma tocopherol methyltransferase 3 mRNA, complete cds; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: MK416205 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tocopherol methyl transferase 3 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: MK988566 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar DS74 tocopherol methyl transferase 3 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001253954 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gamma-tocopherol methyltransferase (GAMMA-TMT), mRNA.
PubMed ID: 28811265 NCBI(pubmed)
22053941 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:37728492..37728569 (+ strand)
Length: 78
Type: five_prime_UTR
Position: Chr06:37728570..37728783 (+ strand)
Length: 214
Type: CDS
Position: Chr06:37729779..37729948 (+ strand)
Length: 170
Type: CDS
Position: Chr06:37730096..37730200 (+ strand)
Length: 105
Type: CDS
Position: Chr06:37730369..37730572 (+ strand)
Length: 204
Type: CDS
Position: Chr06:37730925..37731027 (+ strand)
Length: 103
Type: CDS
Position: Chr06:37731927..37732030 (+ strand)
Length: 104
Type: CDS
Position: Chr06:37732031..37732248 (+ strand)
Length: 218
Type: three_prime_UTR


>Vigan.06G254800.01
GACTTGACAG GTTCTGCATA TAAAAATGGC ATCGTATCAG TTTCTCACTC AATTTTCTTT TCTTCAACGA AGAAGGAGAT
GTCGGCAGTG GAACAGCATG AGAAGGAGAA GGAGAAACTG CAGAAGGGAA TCGCTGAGTT CTACGACGAG TCCTCCACCA
TATGGGAGAA CATTTGGGGC GACCACATGC ACCATGGCTT CTACGACCCG GATTCTACCG TTTCGGTTTC GGATCATCGT
GCTGCTCAGA TCCGAATGAT CGAAGAGTCG CTTCGTTTCG CCTCGCTTTC TGAGGAGCCT ACCAAATGGC CGAAGAGAAT
AGTTGATGTT GGATGTGGCA TAGGGGGCAG TTCCAGATAT TTGGCCGAGA AATTTGGGGC AACCAGCGTT GGTATCACTC
TCAGTCCTGT TCAAGCTCAA AGAGCTAATG CTCTTGCTGC AGCTCAAGGA TTGGCTCACA AGGTTTCTTT TCAGGTTGCA
GACGCTCTGC AGCAACCATT CCCTGATGGA CAGTTTGATC TGGTGTGGTC CATGGAGAGT GGAGAGCATA TGCCTGACAA
AACTAAGTTT GTTGGAGAGT TGGCTCGGGT AGCAGCACCA GGTGGCACCA TAATAATAGT AACATGGTGC CACAGGGATC
TTGGCCCTGA CGAACAATCC CTAAAACCAT GGGAGCAAGA TCTGTTGAAG AAGATTTGTG ATGCATTTTA TCTTCCAGCC
TGGTGCTCAG CTGCTGATTA CATCAAATTG CTTAAATCAC TGTCACTTCA GGATATCAAG TCAGCAGATT GGTCTCCCTT
TGTTGCTCCA TTTTGGCCAG CAGTGATACG TTCTGCGTTA ACATGGAATG GCCTCACTTC ACTTTTGCGC AGTGGAGTGA
AAACCATTAA AGGAGCTTTG GCTATGCCAT TGATGATAAA AGGATACAAG AAGGGTTTGA TTAAGTTTGT GATCATTACA
TGTAGAAAGC CTGAATAAAT AAGTTAAATA TTATATTTAT TGTTTTGACA TAATTTATTT TAATAGTTGA AAAAAAATAT
ATAAGAGAAG CCTATTGAGA GTGAAAGGGG TGAAATGACA TCAAATGGAA GATATATGAA AATTCGATTC AGCTTCCGCT
AAGATACCAA TAATGGTGCA AATTAAAAAA ACACCAATAA TTGTACTTCA TATTTTGCTT TATCTCGATT TGATTT

>Vigan.06G254800.01
ATGTCGGCAG TGGAACAGCA TGAGAAGGAG AAGGAGAAAC TGCAGAAGGG AATCGCTGAG TTCTACGACG AGTCCTCCAC
CATATGGGAG AACATTTGGG GCGACCACAT GCACCATGGC TTCTACGACC CGGATTCTAC CGTTTCGGTT TCGGATCATC
GTGCTGCTCA GATCCGAATG ATCGAAGAGT CGCTTCGTTT CGCCTCGCTT TCTGAGGAGC CTACCAAATG GCCGAAGAGA
ATAGTTGATG TTGGATGTGG CATAGGGGGC AGTTCCAGAT ATTTGGCCGA GAAATTTGGG GCAACCAGCG TTGGTATCAC
TCTCAGTCCT GTTCAAGCTC AAAGAGCTAA TGCTCTTGCT GCAGCTCAAG GATTGGCTCA CAAGGTTTCT TTTCAGGTTG
CAGACGCTCT GCAGCAACCA TTCCCTGATG GACAGTTTGA TCTGGTGTGG TCCATGGAGA GTGGAGAGCA TATGCCTGAC
AAAACTAAGT TTGTTGGAGA GTTGGCTCGG GTAGCAGCAC CAGGTGGCAC CATAATAATA GTAACATGGT GCCACAGGGA
TCTTGGCCCT GACGAACAAT CCCTAAAACC ATGGGAGCAA GATCTGTTGA AGAAGATTTG TGATGCATTT TATCTTCCAG
CCTGGTGCTC AGCTGCTGAT TACATCAAAT TGCTTAAATC ACTGTCACTT CAGGATATCA AGTCAGCAGA TTGGTCTCCC
TTTGTTGCTC CATTTTGGCC AGCAGTGATA CGTTCTGCGT TAACATGGAA TGGCCTCACT TCACTTTTGC GCAGTGGAGT
GAAAACCATT AAAGGAGCTT TGGCTATGCC ATTGATGATA AAAGGATACA AGAAGGGTTT GATTAAGTTT GTGATCATTA
CATGTAGAAA GCCTGAATAA 

>Vigan.06G254800.01
MSAVEQHEKE KEKLQKGIAE FYDESSTIWE NIWGDHMHHG FYDPDSTVSV SDHRAAQIRM IEESLRFASL SEEPTKWPKR
IVDVGCGIGG SSRYLAEKFG ATSVGITLSP VQAQRANALA AAQGLAHKVS FQVADALQQP FPDGQFDLVW SMESGEHMPD
KTKFVGELAR VAAPGGTIII VTWCHRDLGP DEQSLKPWEQ DLLKKICDAF YLPAWCSAAD YIKLLKSLSL QDIKSADWSP
FVAPFWPAVI RSALTWNGLT SLLRSGVKTI KGALAMPLMI KGYKKGLIKF VIITCRKPE*