GBrowse Details

Vigan.06G261100.01

Basic Information:
Name: Vigan.06G261100.01
Multiple alignment
Variant Information
Position: Chr06:38128017..38132451 (- strand)
Length: 4435
Functional Information:
Description: Similar to Uncharacterized protein. [I1L5L4, Glycine max]
GO: Molecular Function: tRNA binding (GO:0000049)
InterPro: tRNA-binding domain (IPR002547)
Nucleic acid-binding, OB-fold (IPR012340)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.11,3.09,4.72,13.45,4.75,4.37,1.78,3.23
Arabidopsis thaliana homolog: AT3G59980.1
Automatic updates:
Name: NM_001249650 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499829 (LOC100499829), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:38128017..38130069 (- strand)
Length: 2053
Type: three_prime_UTR
Position: Chr06:38130070..38130213 (- strand)
Length: 144
Type: CDS
Position: Chr06:38130755..38130961 (- strand)
Length: 207
Type: CDS
Position: Chr06:38131950..38132432 (- strand)
Length: 483
Type: CDS
Position: Chr06:38132433..38132451 (- strand)
Length: 19
Type: five_prime_UTR


>Vigan.06G261100.01
TTTAATTTTA CTGACTGGCA TGGTTATTCT GTGTCTTTTT GGAGGTTTGA AATCCAATCT AATCCTCTTG TATCCATCTC
ACAGCTCTAA AATGGCAAAT GCTTTGAGAG TTGGTTGTGT TATCTCTCTC TGCTCCTTAC GGAATACCAC ACCCCATCTT
CCCCTTCTCT CCAACGCCAC GCGCTTCCGT TCCAAGTTCC CGTTTTTCAC CCTCTCATCG TCGCAAAACT CATTTGGGTC
TCCTTCATTT CGAACACTCT CTTCTTCTTC CATTGATGAA GCAGTAACCA CCGAAGCCAT CACGGGGAAT GCAAGTGGTG
AAGCTGAGAG CAGTATTAGG GACTCCGCGG GGCTGCTTGA CATAAGGGTT GGACGCATTC TGAGGGCATG GAAACACGAT
GAAGCTGATT CCCTGTATGT TGAAGAGGTT GATATCGGTG AGCCTGAACC CAGAATCATA TGCAGTGGCC TTGTCAAGTA
CATCCCTATT GAACACCTTC AGGGCAAAAA GGTTATTGTC CTTTCCAACC TGAAGCCAAG AAATATGCGT GGTGTCAAGT
CCTGCGGAAT GCTGATGGCG GCTTCTGATG CAAAGCATGA GAATGTTGAA CTTCTGTTCC CTCCCGAGGA AGCAGCTCCT
GGTGAAAGAA TATGGTTTGG AACTGAAGAT GAAAAAGATA ATCAACCTGC TGCTGCCACT CCGAATCAGA TACAAAAGAA
AAAGATATGG GAATTGGTGC AACCTCATCT CAAGACAGAT GTTTCTTGCA TTGCGATGCT AGGGGAGCAT GTCATGCGTA
CATCTGTAGG TTCAGTAGCA TGCCAGTCCT TGCAGAATGC AAATATCTCC TGATCAGCCA ACACCTATCA GTACGCAATT
GTTCTGCTTA ACAATGAATT TTTTGGTTTA TAAATTGTTG TTTATTTTAT ATGTACTTCA TTTTCTTTAA TAGTTCTAGT
TTATATTTTA GCATTTTCAC TTGGACATAA TTATTTCAAA TACAGTAGTT TTAAGCAATA CTAATAATAA ATATCAGTTG
TTTTTTGGGG GGCTAATTTC TTGAGGGTCA CAAGCAAATT TGTCGGCCAA TTTGTAAGTA CTAGGATAGG TGAGTAACTT
CCTATTAAAC GTAATTTAGC TAGTTCGAAA TAACCTAGGC TTTAAAGGGA AGACTGATCT GTTTTTGTTT GATCCAGACC
CACCTCCAGG TCATGATGAT TCTCATTATT CACGCTTCAT TCATCTTCGT CTAATGAAAG GGATTTTCTG CAGGTCGATG
TAATCATAAT TTGGCTTCTG CTATCCGAAG CTTGCCCCTG GGATATAATT GTCTGGGAAT ATTGCATTCG GTCAATACTA
GCAGGGGCTT AAAATAACGG AGTTTGTCTC TTTCTCATTT CTTCTAGTAG CTCTTTGCTA GAATCAATAC CTGTCATGCA
TTCACGTCCA CAAGTAGGAC CTTTACGTCA TTGCCACTAA AGTTACCAAT AATCTGTTTA GGGAAGCAAA CTTACACAAG
TTAATGCTCA CCTGCGAGGT ATGCACCATG CACGTAGCCA CTAAATCTGT CACTCGTGTG TTCTCCAGTA AAGAAAATGC
GACCTACTGG AGCCTGAATC ATAACCCCAA AAATTAAACA CAACGGAAAA TGATTTTGAA AATATAAATA TTTCCTGTAG
GAATGAACAC GACTAAATGT TACAGAACAT ATCAAGGGGC ACAAAAGAAA ACCAAAATAC AGGCCAGCAG TCCGTCCCAA
TAGGAGAAAA ACACAATAGG TAATATTGGA ACACCAAATT CAAAACTTAA AATGTGGTTA CTAGTGTAGT TTTGCGTGAT
TGATTATTGC AATTTGGTAA CATATTCATA CGACCAGTAG GTTATCAGAA GAAAAAGATA CAGAAAAAAT GGTCACTTTA
CAATTGGATG TTTAGTAATT CTAGAACATG CTTCAGGAAG GAAAACTACG TATGTTGCTC TACTCCCTGC CCTGCTCGCT
CCTTTTTACC CTTTGTTTGG GAGGTATTTC GCAAGTGAAA TCCTAGAATA ATTCACAGAA AAATAAATGC TCTAGAATTT
TATTTTTTGT GTCCGCTTTA ACACTTCGTT AAGCTAATAC AGTAAACTTT CGCATTTGTA TTAAATACGA TTTTCGCAGT
AGTTAAAAGC AAAGTCAAGA AATACGACTT CTTTCACGTG TTTTCAAGTC CGACTTTAGC TATGTAGATG AGTATTTTAA
AATCTAGCAA TTTCAGTAAT TTTCGTAACA GTCAATTTTG TAAAGTTTCC AATGTTTTTG GTATGTTTAT GAATATTTAA
AATTATTAAC AAACCTTAAT ATCATGAACT AGTTGGGTAT TAGAGATGAT GGGATGGTTG CTGTAGCTGC CACGTTGGAA
CCTGTTATTC CACCATCGAG GAACCAGTAT ATCAATGGCA TCAGGAATAT TGGGTCCAAA CATTTCCCTG AGCACCTCCA
TAGCTTCTCT CAAGGTGTCT TCATCGGCTT GAGCTTCCAC ACGATTAGAT TCCCCATTTG TCAATGTGAC GGACAAGATA
TTAGATCCAG GGTATGTGTT CTCCATTTGC TGTTGATAAA AAAGTGGATC AGATTGCTCT ACAAGGTTTT GACAATATAA
GAGAAAAAGA CTAACGTCCA ACATTTGTTG CAAAGCAATC TGATTCAATT ATTATCAAGG TCCTCGAAGT TATTATATTA
AAAGTCGATG GCTAACTCCT CTACAATTAT GTCAGTTGGT GAAGTTTTGA TACTTAACTG TAAAAGTCCG AATTTAGTTG
TACCATATTT CAACCCTTTC TCTCCTTATC CTCTCTACTT CCTACAAGAA AATCATGTCA GTGTTGTTTG TCGTCTAGAC
TTTAAAACTC ACGTTTCAGT CGTGAA

>Vigan.06G261100.01
ATGGTTATTC TGTGTCTTTT TGGAGGTTTG AAATCCAATC TAATCCTCTT GTATCCATCT CACAGCTCTA AAATGGCAAA
TGCTTTGAGA GTTGGTTGTG TTATCTCTCT CTGCTCCTTA CGGAATACCA CACCCCATCT TCCCCTTCTC TCCAACGCCA
CGCGCTTCCG TTCCAAGTTC CCGTTTTTCA CCCTCTCATC GTCGCAAAAC TCATTTGGGT CTCCTTCATT TCGAACACTC
TCTTCTTCTT CCATTGATGA AGCAGTAACC ACCGAAGCCA TCACGGGGAA TGCAAGTGGT GAAGCTGAGA GCAGTATTAG
GGACTCCGCG GGGCTGCTTG ACATAAGGGT TGGACGCATT CTGAGGGCAT GGAAACACGA TGAAGCTGAT TCCCTGTATG
TTGAAGAGGT TGATATCGGT GAGCCTGAAC CCAGAATCAT ATGCAGTGGC CTTGTCAAGT ACATCCCTAT TGAACACCTT
CAGGGCAAAA AGGTTATTGT CCTTTCCAAC CTGAAGCCAA GAAATATGCG TGGTGTCAAG TCCTGCGGAA TGCTGATGGC
GGCTTCTGAT GCAAAGCATG AGAATGTTGA ACTTCTGTTC CCTCCCGAGG AAGCAGCTCC TGGTGAAAGA ATATGGTTTG
GAACTGAAGA TGAAAAAGAT AATCAACCTG CTGCTGCCAC TCCGAATCAG ATACAAAAGA AAAAGATATG GGAATTGGTG
CAACCTCATC TCAAGACAGA TGTTTCTTGC ATTGCGATGC TAGGGGAGCA TGTCATGCGT ACATCTGTAG GTTCAGTAGC
ATGCCAGTCC TTGCAGAATG CAAATATCTC CTGA

>Vigan.06G261100.01
MVILCLFGGL KSNLILLYPS HSSKMANALR VGCVISLCSL RNTTPHLPLL SNATRFRSKF PFFTLSSSQN SFGSPSFRTL
SSSSIDEAVT TEAITGNASG EAESSIRDSA GLLDIRVGRI LRAWKHDEAD SLYVEEVDIG EPEPRIICSG LVKYIPIEHL
QGKKVIVLSN LKPRNMRGVK SCGMLMAASD AKHENVELLF PPEEAAPGER IWFGTEDEKD NQPAAATPNQ IQKKKIWELV
QPHLKTDVSC IAMLGEHVMR TSVGSVACQS LQNANIS*